Wall clock time and date at job start Sun Mar 29 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48137 * 110.99963 * 2 1 4 4 C 1.54795 * 101.90807 * 211.89783 * 3 2 1 5 5 H 1.08992 * 110.85389 * 142.36545 * 4 3 2 6 6 N 1.46499 * 110.85104 * 265.79290 * 4 3 2 7 7 C 1.34771 * 119.99981 * 204.99678 * 6 4 3 8 8 O 1.21695 * 120.00092 * 0.02562 * 7 6 4 9 9 C 1.46372 * 120.00055 * 180.02562 * 7 6 4 10 10 H 1.08004 * 120.00227 * 359.97438 * 9 7 6 11 11 C 1.40051 * 120.00273 * 180.02562 * 9 7 6 12 12 N 1.30673 * 119.99683 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00108 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47090 * 60.00601 * 13 11 9 15 15 H 1.48502 * 109.47037 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47641 * 300.00016 * 13 11 9 17 17 C 1.51810 * 102.23073 * 23.97888 * 4 3 2 18 18 O 1.21286 * 126.04007 * 165.20147 * 17 4 3 19 19 N 1.34598 * 107.92383 * 345.17810 * 17 4 3 20 20 H 1.09004 * 109.46762 * 60.00419 * 1 2 3 21 21 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47210 * 300.00589 * 1 2 3 23 23 H 1.09002 * 110.95176 * 93.73307 * 3 2 1 24 24 H 1.09001 * 110.94644 * 330.06028 * 3 2 1 25 25 H 0.97007 * 119.99799 * 25.00238 * 6 4 3 26 26 H 0.97004 * 120.00085 * 179.97438 * 12 11 9 27 27 H 0.97000 * 123.52728 * 178.42298 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 3.3149 1.2204 -0.8003 5 1 3.4886 2.0848 -1.4410 6 7 4.4502 1.0051 0.1002 7 6 5.6959 1.3334 -0.2956 8 8 5.8777 1.8091 -1.4009 9 6 6.8303 1.1178 0.6039 10 1 6.6690 0.6960 1.5850 11 6 8.1248 1.4594 0.1928 12 7 8.3198 1.9712 -0.9936 13 14 9.5724 1.1849 1.3411 14 1 9.6717 -0.2583 1.6761 15 1 10.8240 1.6248 0.6737 16 1 9.3726 1.9695 2.5860 17 6 3.0370 -0.0227 -1.6263 18 8 3.6743 -0.3979 -2.5876 19 7 1.9587 -0.6352 -1.1031 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.2015 1.7231 1.0158 24 1 1.3160 2.0629 -0.5081 25 1 4.3052 0.6261 0.9813 26 1 9.2164 2.2082 -1.2782 27 1 1.5702 -1.4438 -1.4721 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306179826.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:05 Heat of formation + Delta-G solvation = -25.776056 kcal Electronic energy + Delta-G solvation = -14253.309515 eV Core-core repulsion = 11626.786756 eV Total energy + Delta-G solvation = -2626.522759 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.65787 -37.09103 -36.89678 -33.36132 -32.27005 -31.23403 -29.42104 -26.24538 -24.84358 -22.41023 -20.99258 -19.69427 -17.68757 -16.99154 -16.12514 -15.44925 -15.15847 -14.50128 -14.31387 -13.93511 -13.64948 -13.18008 -12.72155 -12.39290 -12.16535 -11.92104 -11.40849 -11.07427 -10.97625 -10.59672 -10.43469 -10.23095 -9.68155 -8.81515 -7.94572 -7.64215 -7.57355 -6.16381 -4.62777 2.88333 2.98421 3.19018 3.23731 3.25945 4.13148 4.35273 4.52369 4.72646 4.76941 4.88696 5.14726 5.29439 5.44654 5.57764 5.72258 5.95673 6.01693 6.25577 7.22836 7.45467 7.72491 7.87957 7.98726 8.30992 8.62113 9.03836 9.47390 10.60836 10.78629 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.056442 B = 0.007803 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.961721 B = 3587.288789 C = 3790.721601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.285 5.285 3 C 0.008 3.992 4 C 0.126 3.874 5 H 0.116 0.884 6 N -0.740 5.740 7 C 0.552 3.448 8 O -0.567 6.567 9 C -0.542 4.542 10 H 0.069 0.931 11 C 0.087 3.913 12 N -0.765 5.765 13 Si 0.911 3.089 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.268 1.268 17 C 0.501 3.499 18 O -0.504 6.504 19 N -0.591 5.591 20 H 0.037 0.963 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.388 0.612 26 H 0.270 0.730 27 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 -2.059 5.248 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 N -0.103 5.103 3 C -0.120 4.120 4 C 0.014 3.986 5 H 0.133 0.867 6 N -0.398 5.398 7 C 0.357 3.643 8 O -0.448 6.448 9 C -0.579 4.579 10 H 0.087 0.913 11 C -0.133 4.133 12 N -0.394 5.394 13 Si 0.735 3.265 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.284 3.716 18 O -0.373 6.373 19 N -0.342 5.342 20 H 0.056 0.944 21 H 0.093 0.907 22 H 0.106 0.894 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.221 0.779 26 H 0.080 0.920 27 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -12.804 -1.985 4.186 13.616 hybrid contribution -0.115 -0.311 0.226 0.401 sum -12.919 -2.296 4.412 13.843 Atomic orbital electron populations 1.23139 0.88010 1.03059 1.02147 1.65934 1.07623 1.14176 1.22576 1.24062 0.95915 0.88523 1.03521 1.21390 0.87598 0.96545 0.93029 0.86676 1.46090 1.05510 1.70996 1.17155 1.18356 0.80590 0.77894 0.87510 1.90637 1.83446 1.48201 1.22547 1.20784 0.90411 1.44981 1.01693 0.91283 1.25713 0.99706 0.92953 0.94952 1.70015 1.22328 1.29882 1.17148 0.86392 0.80091 0.79405 0.80597 1.19280 1.20579 1.19248 1.22060 0.79201 0.86987 0.83361 1.90771 1.50537 1.69625 1.26402 1.46084 1.31476 1.27860 1.28732 0.94418 0.90666 0.89363 0.86624 0.91151 0.77879 0.91970 0.74537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.82 60.07 0.59 0.47 15 2 N -0.28 -3.56 5.86 -119.13 -0.70 -4.26 15 3 C 0.01 0.10 6.70 -2.20 -0.01 0.09 15 4 C 0.13 2.45 3.49 -67.59 -0.24 2.21 15 5 H 0.12 2.47 7.54 -51.93 -0.39 2.08 15 6 N -0.74 -16.64 5.13 -54.89 -0.28 -16.92 15 7 C 0.55 15.99 7.75 -12.99 -0.10 15.89 15 8 O -0.57 -18.87 14.66 5.19 0.08 -18.79 15 9 C -0.54 -15.49 9.54 -35.63 -0.34 -15.83 15 10 H 0.07 1.79 7.85 -52.48 -0.41 1.37 15 11 C 0.09 2.46 5.50 -17.37 -0.10 2.37 15 12 N -0.77 -23.43 11.83 55.55 0.66 -22.77 15 13 Si 0.91 20.40 29.56 -169.99 -5.02 15.37 15 14 H -0.27 -5.88 7.11 56.52 0.40 -5.47 15 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 17 C 0.50 10.21 8.29 -10.52 -0.09 10.12 15 18 O -0.50 -12.83 18.03 5.55 0.10 -12.73 15 19 N -0.59 -8.78 6.01 31.48 0.19 -8.59 15 20 H 0.04 0.31 8.10 -51.93 -0.42 -0.11 15 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.09 0.60 8.14 -51.93 -0.42 0.17 15 23 H 0.12 1.35 8.08 -51.93 -0.42 0.93 15 24 H 0.07 0.76 7.84 -51.93 -0.41 0.36 15 25 H 0.39 7.64 8.63 -40.82 -0.35 7.29 15 26 H 0.27 7.49 8.29 -40.82 -0.34 7.15 15 27 H 0.41 5.14 8.90 -185.31 -1.65 3.49 15 LS Contribution 245.00 15.07 3.69 3.69 Total: -1.00 -37.78 245.00 -5.61 -43.39 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.03 Total: 6.29 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -0.28 Total: 15.32 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.13 Total: -52.54 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: 0.18 Total: -31.52 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -37.78 -5.61 -43.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179826.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.611 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds