Wall clock time and date at job start Sun Mar 29 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48137 * 110.99963 * 2 1 4 4 C 1.54795 * 101.90807 * 211.89783 * 3 2 1 5 5 H 1.08992 * 110.85389 * 142.36545 * 4 3 2 6 6 N 1.46499 * 110.85104 * 265.79290 * 4 3 2 7 7 C 1.34771 * 119.99981 * 204.99678 * 6 4 3 8 8 O 1.21695 * 120.00092 * 0.02562 * 7 6 4 9 9 C 1.46372 * 120.00055 * 180.02562 * 7 6 4 10 10 H 1.08004 * 120.00227 * 359.97438 * 9 7 6 11 11 C 1.40051 * 120.00273 * 180.02562 * 9 7 6 12 12 N 1.30673 * 119.99683 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00108 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47090 * 60.00601 * 13 11 9 15 15 H 1.48502 * 109.47037 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47641 * 300.00016 * 13 11 9 17 17 C 1.51810 * 102.23073 * 23.97888 * 4 3 2 18 18 O 1.21286 * 126.04007 * 165.20147 * 17 4 3 19 19 N 1.34598 * 107.92383 * 345.17810 * 17 4 3 20 20 H 1.09004 * 109.46762 * 60.00419 * 1 2 3 21 21 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47210 * 300.00589 * 1 2 3 23 23 H 1.09002 * 110.95176 * 93.73307 * 3 2 1 24 24 H 1.09001 * 110.94644 * 330.06028 * 3 2 1 25 25 H 0.97007 * 119.99799 * 25.00238 * 6 4 3 26 26 H 0.97004 * 120.00085 * 179.97438 * 12 11 9 27 27 H 0.97000 * 123.52728 * 178.42298 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 3.3149 1.2204 -0.8003 5 1 3.4886 2.0848 -1.4410 6 7 4.4502 1.0051 0.1002 7 6 5.6959 1.3334 -0.2956 8 8 5.8777 1.8091 -1.4009 9 6 6.8303 1.1178 0.6039 10 1 6.6690 0.6960 1.5850 11 6 8.1248 1.4594 0.1928 12 7 8.3198 1.9712 -0.9936 13 14 9.5724 1.1849 1.3411 14 1 9.6717 -0.2583 1.6761 15 1 10.8240 1.6248 0.6737 16 1 9.3726 1.9695 2.5860 17 6 3.0370 -0.0227 -1.6263 18 8 3.6743 -0.3979 -2.5876 19 7 1.9587 -0.6352 -1.1031 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.2015 1.7231 1.0158 24 1 1.3160 2.0629 -0.5081 25 1 4.3052 0.6261 0.9813 26 1 9.2164 2.2082 -1.2782 27 1 1.5702 -1.4438 -1.4721 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306179826.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:04 Heat of formation + Delta-G solvation = -59.892822 kcal Electronic energy + Delta-G solvation = -14254.788929 eV Core-core repulsion = 11626.786756 eV Total energy + Delta-G solvation = -2628.002173 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.04037 -39.11584 -38.51019 -35.23707 -34.42390 -32.40459 -31.01899 -28.22122 -26.02088 -23.66336 -22.70443 -21.52873 -19.44956 -18.56633 -17.72301 -17.37635 -16.70525 -15.94117 -15.89805 -15.59432 -14.96188 -14.69869 -14.32192 -14.14384 -13.61965 -13.18168 -12.95118 -12.72316 -12.66753 -12.47944 -12.03702 -11.92577 -11.37560 -10.90127 -9.91664 -9.54694 -9.08158 -8.28766 -6.86643 1.27964 1.42022 1.46012 1.57730 1.77426 2.26609 2.46618 3.07654 3.15924 3.40301 3.50486 3.78157 4.15245 4.52399 4.57647 4.61547 4.83920 5.00550 5.05788 5.32155 5.84425 5.97409 6.08339 6.22770 6.47166 6.86183 7.21516 7.48498 8.47446 8.67079 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.056442 B = 0.007803 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.961721 B = 3587.288789 C = 3790.721601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.292 5.292 3 C 0.028 3.972 4 C 0.113 3.887 5 H 0.085 0.915 6 N -0.727 5.727 7 C 0.535 3.465 8 O -0.624 6.624 9 C -0.570 4.570 10 H 0.093 0.907 11 C 0.026 3.974 12 N -0.823 5.823 13 Si 1.003 2.997 14 H -0.257 1.257 15 H -0.276 1.276 16 H -0.248 1.248 17 C 0.489 3.511 18 O -0.571 6.571 19 N -0.563 5.563 20 H 0.045 0.955 21 H 0.091 0.909 22 H 0.116 0.884 23 H 0.139 0.861 24 H 0.102 0.898 25 H 0.404 0.596 26 H 0.274 0.726 27 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.154 -2.607 8.035 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 N -0.110 5.110 3 C -0.100 4.100 4 C 0.002 3.998 5 H 0.103 0.897 6 N -0.384 5.384 7 C 0.340 3.660 8 O -0.510 6.510 9 C -0.606 4.606 10 H 0.111 0.889 11 C -0.189 4.189 12 N -0.452 5.452 13 Si 0.822 3.178 14 H -0.181 1.181 15 H -0.201 1.201 16 H -0.171 1.171 17 C 0.273 3.727 18 O -0.447 6.447 19 N -0.311 5.311 20 H 0.063 0.937 21 H 0.109 0.891 22 H 0.134 0.866 23 H 0.157 0.843 24 H 0.120 0.880 25 H 0.239 0.761 26 H 0.084 0.916 27 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -14.380 -2.570 7.052 16.221 hybrid contribution 0.140 -0.159 -0.603 0.639 sum -14.240 -2.730 6.449 15.868 Atomic orbital electron populations 1.23301 0.84458 1.04806 1.03820 1.65944 1.10671 1.13697 1.20733 1.24067 0.92411 0.89534 1.03961 1.21560 0.89537 0.95381 0.93350 0.89705 1.45593 1.04867 1.69868 1.18030 1.18767 0.82803 0.77533 0.86941 1.90591 1.84941 1.50686 1.24752 1.21392 0.91174 1.45350 1.02729 0.88883 1.27059 1.03449 0.91694 0.96742 1.70208 1.23545 1.31434 1.20048 0.85004 0.74864 0.79924 0.78056 1.18086 1.20121 1.17136 1.22157 0.80195 0.87543 0.82846 1.90726 1.53260 1.71332 1.29331 1.45919 1.29638 1.27628 1.27961 0.93660 0.89053 0.86608 0.84345 0.88044 0.76076 0.91567 0.72906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.19 9.82 127.69 1.25 1.06 15 2 N -0.29 -6.27 5.86 -530.81 -3.11 -9.38 15 3 C 0.03 0.64 6.70 86.68 0.58 1.22 15 4 C 0.11 4.42 3.49 45.21 0.16 4.57 15 5 H 0.08 3.83 7.54 -2.39 -0.02 3.81 15 6 N -0.73 -32.99 5.13 -445.78 -2.29 -35.28 15 7 C 0.53 32.03 7.75 86.36 0.67 32.70 15 8 O -0.62 -43.80 14.66 -4.33 -0.06 -43.86 15 9 C -0.57 -32.91 9.54 24.83 0.24 -32.67 15 10 H 0.09 4.72 7.85 -2.91 -0.02 4.70 15 11 C 0.03 1.46 5.50 85.31 0.47 1.93 15 12 N -0.82 -52.14 11.83 21.84 0.26 -51.88 15 13 Si 1.00 41.66 29.56 68.60 2.03 43.68 15 14 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 15 H -0.28 -11.15 7.11 99.48 0.71 -10.45 15 16 H -0.25 -9.43 7.11 99.48 0.71 -8.72 15 17 C 0.49 20.27 8.29 88.04 0.73 21.00 15 18 O -0.57 -30.59 18.03 -3.05 -0.05 -30.65 15 19 N -0.56 -15.77 6.01 -172.80 -1.04 -16.81 15 20 H 0.04 0.54 8.10 -2.39 -0.02 0.52 15 21 H 0.09 0.89 8.14 -2.39 -0.02 0.87 15 22 H 0.12 0.89 8.14 -2.39 -0.02 0.87 15 23 H 0.14 2.66 8.08 -2.39 -0.02 2.64 15 24 H 0.10 1.80 7.84 -2.39 -0.02 1.78 15 25 H 0.40 15.48 8.63 -92.70 -0.80 14.68 15 26 H 0.27 15.78 8.29 -92.71 -0.77 15.01 15 27 H 0.43 9.80 8.90 -215.62 -1.92 7.88 15 Total: -1.00 -88.49 245.00 -1.67 -90.16 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -1.50 Total: 24.19 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 4.10 Total: 29.81 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -6.18 Total: -113.34 kcal Atomic # 8 Polarization: -74.39 SS G_CDS: -0.12 Total: -74.51 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -88.49 -1.67 -90.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179826.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.270 kcal (2) G-P(sol) polarization free energy of solvation -88.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds