Wall clock time and date at job start Sun Mar 29 2020 21:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48138 * 110.99796 * 2 1 4 4 C 1.54794 * 101.87368 * 95.47783 * 3 2 1 5 5 H 1.09003 * 111.03033 * 265.73584 * 4 3 2 6 6 N 1.46500 * 110.85189 * 142.18100 * 4 3 2 7 7 C 1.34784 * 119.99972 * 160.73522 * 6 4 3 8 8 O 1.21686 * 119.99541 * 0.02562 * 7 6 4 9 9 C 1.46373 * 120.00094 * 180.02562 * 7 6 4 10 10 H 1.08004 * 119.99937 * 359.97438 * 9 7 6 11 11 C 1.40043 * 120.00181 * 180.02562 * 9 7 6 12 12 N 1.30672 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00049 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47202 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47025 * 119.99702 * 13 11 9 16 16 H 1.48500 * 109.47085 * 239.99539 * 13 11 9 17 17 C 1.51816 * 102.23140 * 23.99718 * 4 3 2 18 18 O 1.21281 * 126.03727 * 164.91069 * 17 4 3 19 19 N 1.34588 * 107.91944 * 345.17853 * 17 4 3 20 20 H 1.09002 * 109.47408 * 59.99688 * 1 2 3 21 21 H 1.09004 * 109.46989 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47248 * 299.99474 * 1 2 3 23 23 H 1.09001 * 110.95266 * 337.33762 * 3 2 1 24 24 H 1.08999 * 110.95134 * 213.62678 * 3 2 1 25 25 H 0.96993 * 120.00122 * 340.74127 * 6 4 3 26 26 H 0.97000 * 119.99969 * 180.02562 * 12 11 9 27 27 H 0.96998 * 123.52450 * 178.40667 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 6 2.2490 1.6285 1.5079 5 1 1.3942 2.1221 1.9703 6 7 3.4725 2.4075 1.7142 7 6 3.6703 3.0556 2.8794 8 8 2.8328 2.9933 3.7600 9 6 4.8924 3.8343 3.0853 10 1 5.6359 3.8893 2.3038 11 6 5.0982 4.5073 4.2961 12 7 4.1990 4.4404 5.2418 13 14 6.6582 5.5005 4.5592 14 1 7.5094 5.4162 3.3453 15 1 6.3040 6.9192 4.8183 16 1 7.4017 4.9554 5.7234 17 6 2.4111 0.2164 2.0412 18 8 2.8725 -0.0903 3.1201 19 7 1.9577 -0.6352 1.1029 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.2626 2.0835 -0.3922 24 1 2.9308 1.4432 -0.5637 25 1 4.1401 2.4569 1.0124 26 1 4.3413 4.9069 6.0803 27 1 1.9765 -1.6000 1.2010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306179827.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:06 Heat of formation + Delta-G solvation = -59.089910 kcal Electronic energy + Delta-G solvation = -14312.290347 eV Core-core repulsion = 11684.322991 eV Total energy + Delta-G solvation = -2627.967356 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.17009 -39.15383 -38.49722 -35.27021 -34.44333 -32.30224 -30.78400 -28.22189 -26.42292 -23.61419 -22.83760 -21.27058 -19.51376 -18.55860 -17.86215 -17.34898 -16.93651 -16.07900 -15.90864 -15.29589 -14.94072 -14.83781 -14.37002 -14.12142 -13.83689 -13.14478 -13.00193 -12.81303 -12.69232 -12.54561 -11.97538 -11.62802 -11.17478 -10.94435 -9.92243 -9.68720 -9.32081 -8.30781 -6.87936 1.29952 1.39918 1.41364 1.59079 1.78774 2.24206 2.44883 2.81492 3.17767 3.46965 3.52827 3.76286 4.07267 4.39489 4.57497 4.62451 4.78449 4.97836 5.27827 5.30927 5.82107 5.87236 6.05192 6.20592 6.50226 6.84966 7.18467 7.45607 8.46448 8.65957 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.065371 B = 0.007669 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.220372 B = 3649.961426 C = 3763.405768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.283 5.283 3 C 0.041 3.959 4 C 0.092 3.908 5 H 0.086 0.914 6 N -0.731 5.731 7 C 0.538 3.462 8 O -0.623 6.623 9 C -0.571 4.571 10 H 0.093 0.907 11 C 0.025 3.975 12 N -0.824 5.824 13 Si 1.003 2.997 14 H -0.243 1.243 15 H -0.265 1.265 16 H -0.273 1.273 17 C 0.476 3.524 18 O -0.561 6.561 19 N -0.564 5.564 20 H 0.119 0.881 21 H 0.091 0.909 22 H 0.024 0.976 23 H 0.134 0.866 24 H 0.125 0.875 25 H 0.403 0.597 26 H 0.274 0.726 27 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -4.959 -14.635 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 N -0.101 5.101 3 C -0.087 4.087 4 C -0.020 4.020 5 H 0.104 0.896 6 N -0.387 5.387 7 C 0.343 3.657 8 O -0.509 6.509 9 C -0.607 4.607 10 H 0.111 0.889 11 C -0.190 4.190 12 N -0.453 5.453 13 Si 0.822 3.178 14 H -0.166 1.166 15 H -0.190 1.190 16 H -0.199 1.199 17 C 0.259 3.741 18 O -0.435 6.435 19 N -0.314 5.314 20 H 0.137 0.863 21 H 0.110 0.890 22 H 0.043 0.957 23 H 0.152 0.848 24 H 0.143 0.857 25 H 0.239 0.761 26 H 0.084 0.916 27 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -4.143 -5.302 -13.702 15.265 hybrid contribution 0.281 0.280 1.149 1.216 sum -3.862 -5.022 -12.552 14.061 Atomic orbital electron populations 1.23413 0.85805 1.04609 1.02986 1.65013 1.09501 1.14542 1.21026 1.23995 1.05044 0.88592 0.91029 1.21870 0.91830 0.89178 0.99100 0.89642 1.45543 1.20946 1.53290 1.18928 1.18707 0.87829 0.78935 0.80239 1.90569 1.48574 1.67379 1.44331 1.21454 1.04268 1.32258 1.02738 0.88929 1.27056 1.01262 0.96272 0.94386 1.70217 1.35425 1.34752 1.04924 0.84907 0.76191 0.77287 0.79464 1.16551 1.18984 1.19860 1.22675 0.76923 0.91126 0.83400 1.90744 1.46415 1.83127 1.23228 1.45872 1.61846 1.09112 1.14576 0.86257 0.89032 0.95697 0.84763 0.85749 0.76138 0.91614 0.72075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.32 9.74 127.69 1.24 0.93 15 2 N -0.28 -6.04 5.88 -530.81 -3.12 -9.16 15 3 C 0.04 0.92 6.86 86.68 0.60 1.52 15 4 C 0.09 3.53 3.34 45.21 0.15 3.68 15 5 H 0.09 3.71 7.71 -2.39 -0.02 3.69 15 6 N -0.73 -32.96 5.19 -445.75 -2.31 -35.27 15 7 C 0.54 32.26 7.74 86.36 0.67 32.93 15 8 O -0.62 -43.62 14.75 -4.30 -0.06 -43.68 15 9 C -0.57 -33.11 9.54 24.83 0.24 -32.87 15 10 H 0.09 4.73 7.85 -2.91 -0.02 4.71 15 11 C 0.02 1.43 5.50 85.30 0.47 1.90 15 12 N -0.82 -52.34 11.83 21.83 0.26 -52.09 15 13 Si 1.00 41.91 29.56 68.60 2.03 43.94 15 14 H -0.24 -9.22 7.11 99.48 0.71 -8.52 15 15 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 17 C 0.48 19.67 8.28 88.04 0.73 20.40 15 18 O -0.56 -30.50 18.03 -3.03 -0.05 -30.56 15 19 N -0.56 -15.81 5.96 -172.81 -1.03 -16.84 15 20 H 0.12 1.19 8.11 -2.39 -0.02 1.17 15 21 H 0.09 1.21 8.14 -2.39 -0.02 1.19 15 22 H 0.02 0.49 8.14 -2.39 -0.02 0.47 15 23 H 0.13 2.18 7.77 -2.39 -0.02 2.16 15 24 H 0.12 2.41 7.80 -2.39 -0.02 2.39 15 25 H 0.40 15.03 8.36 -92.71 -0.78 14.26 15 26 H 0.27 15.73 8.29 -92.71 -0.77 14.96 15 27 H 0.43 10.17 8.96 -215.66 -1.93 8.24 15 Total: -1.00 -89.08 244.67 -1.70 -90.77 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -1.49 Total: 24.41 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: 4.09 Total: 28.49 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -6.21 Total: -113.36 kcal Atomic # 8 Polarization: -74.12 SS G_CDS: -0.12 Total: -74.24 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -89.08 -1.70 -90.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179827.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.682 kcal (2) G-P(sol) polarization free energy of solvation -89.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds