Wall clock time and date at job start Sun Mar 29 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99791 * 2 1 4 4 H 1.48499 * 109.47164 * 274.98839 * 3 2 1 5 5 H 1.48496 * 109.47175 * 34.99114 * 3 2 1 6 6 H 1.48506 * 109.46750 * 154.98924 * 3 2 1 7 7 C 1.37874 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99974 * 189.58391 * 7 2 1 9 9 C 1.50701 * 120.00204 * 9.58930 * 7 2 1 10 10 C 1.53071 * 109.44475 * 65.23906 * 9 7 2 11 11 C 1.53187 * 109.29548 * 181.23482 * 10 9 7 12 12 N 1.46920 * 108.89681 * 305.58486 * 11 10 9 13 13 C 1.34783 * 120.62842 * 233.55650 * 12 11 10 14 14 O 1.21279 * 120.00098 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00022 * 179.97438 * 13 12 11 16 16 O 1.42900 * 109.47329 * 180.02562 * 15 13 12 17 17 C 1.46919 * 118.74248 * 53.53585 * 12 11 10 18 18 C 1.53040 * 109.45879 * 185.44890 * 9 7 2 19 19 H 0.96997 * 119.99642 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.45517 * 305.41641 * 9 7 2 21 21 H 1.09006 * 109.38703 * 61.36470 * 10 9 7 22 22 H 1.09000 * 109.62169 * 301.25753 * 10 9 7 23 23 H 1.09000 * 109.58586 * 185.71887 * 11 10 9 24 24 H 1.09003 * 109.58533 * 65.44536 * 11 10 9 25 25 H 1.08998 * 109.47526 * 300.00590 * 15 13 12 26 26 H 1.09009 * 109.47012 * 60.00136 * 15 13 12 27 27 H 0.96705 * 113.99829 * 180.02562 * 16 15 13 28 28 H 1.08994 * 109.58851 * 66.17502 * 17 12 11 29 29 H 1.08999 * 109.58987 * 186.46851 * 17 12 11 30 30 H 1.09002 * 109.49926 * 58.67740 * 18 9 7 31 31 H 1.08999 * 109.52727 * 298.59014 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5033 2.6199 0.8028 6 1 3.5955 1.4120 0.5920 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1563 9 6 1.2668 -2.4901 -0.2163 10 6 0.6866 -2.5154 -1.6325 11 6 -0.0885 -3.8206 -1.8388 12 7 0.7938 -4.9526 -1.5249 13 6 0.9780 -5.9473 -2.4156 14 8 0.4132 -5.9130 -3.4882 15 6 1.8866 -7.1014 -2.0790 16 8 1.9179 -8.0183 -3.1747 17 6 1.4720 -4.9797 -0.2218 18 6 2.2328 -3.6631 -0.0346 19 1 -0.4849 0.8400 -0.0004 20 1 0.4560 -2.5719 0.5077 21 1 1.4986 -2.4561 -2.3574 22 1 0.0147 -1.6679 -1.7680 23 1 -0.4175 -3.8902 -2.8756 24 1 -0.9555 -3.8390 -1.1784 25 1 2.8930 -6.7283 -1.8892 26 1 1.5140 -7.6099 -1.1898 27 1 2.4843 -8.7881 -3.0273 28 1 0.7336 -5.0910 0.5721 29 1 2.1709 -5.8155 -0.1908 30 1 2.6612 -3.6299 0.9672 31 1 3.0309 -3.5958 -0.7739 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306192220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:46 Heat of formation + Delta-G solvation = -93.728633 kcal Electronic energy + Delta-G solvation = -14584.017658 eV Core-core repulsion = 12058.088597 eV Total energy + Delta-G solvation = -2525.929061 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.72119 -37.12476 -36.08595 -33.55243 -31.21421 -30.55871 -27.78020 -25.86234 -23.01645 -22.23807 -20.00785 -18.37388 -17.90528 -16.45184 -16.05964 -15.64171 -15.36792 -14.53960 -13.81764 -13.61625 -13.26726 -12.79596 -12.76224 -12.21870 -12.06424 -11.78855 -11.30932 -10.92805 -10.69712 -10.47802 -10.25618 -10.19775 -9.65012 -9.46025 -9.08660 -9.01671 -8.37142 -8.06521 -6.07452 -4.09504 2.91511 3.19325 3.27839 3.35726 3.37779 4.39778 4.40795 4.83815 5.06880 5.20277 5.24977 5.34689 5.70642 5.84125 5.98677 6.18254 6.34043 6.39577 6.54475 6.75700 6.90504 7.11339 7.22823 7.47682 7.64743 7.82096 7.87816 7.94517 8.36206 8.53461 8.94017 9.54554 11.01361 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061145 B = 0.007245 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.819483 B = 3863.851228 C = 4014.283226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.117 4.117 11 C 0.110 3.890 12 N -0.600 5.600 13 C 0.507 3.493 14 O -0.536 6.536 15 C 0.061 3.939 16 O -0.550 6.550 17 C 0.105 3.895 18 C -0.124 4.124 19 H 0.261 0.739 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.381 0.619 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -11.230 0.726 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.155 4.155 11 C -0.011 4.011 12 N -0.335 5.335 13 C 0.294 3.706 14 O -0.413 6.413 15 C -0.020 4.020 16 O -0.354 6.354 17 C -0.018 4.018 18 C -0.162 4.162 19 H 0.071 0.929 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.228 0.772 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.936 -10.647 -0.100 11.045 hybrid contribution 0.915 0.631 0.405 1.183 sum 3.852 -10.016 0.305 10.735 Atomic orbital electron populations 1.69952 1.05927 1.26642 1.50055 1.24961 0.94778 0.99091 0.94934 0.86659 0.80026 0.83775 0.78034 1.20700 1.21297 1.19923 1.21142 0.94071 0.90932 1.49396 0.92686 1.18658 0.94084 0.91698 0.92774 1.21952 0.99240 0.94406 0.99929 1.21851 0.92316 0.85928 1.01027 1.48171 1.46816 1.21993 1.16539 1.20213 0.82585 0.83379 0.84434 1.90673 1.49292 1.78026 1.23342 1.21925 0.99373 0.90812 0.89931 1.86598 1.71729 1.36457 1.40607 1.21908 0.96056 0.99572 0.84271 1.22017 0.99075 0.94244 1.00905 0.92939 0.94685 0.94033 0.89620 0.90537 0.92040 0.90634 0.90848 0.77250 0.91517 0.91425 0.91800 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 12.15 55.43 0.67 -24.12 16 2 C 0.06 1.73 5.19 -17.82 -0.09 1.64 16 3 Si 0.89 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.63 8.48 -34.44 -0.29 -13.93 16 8 H 0.05 1.44 7.77 -52.48 -0.41 1.03 16 9 C 0.05 1.08 1.92 -91.71 -0.18 0.91 16 10 C -0.12 -2.65 5.21 -26.60 -0.14 -2.79 16 11 C 0.11 2.20 6.43 -3.72 -0.02 2.18 16 12 N -0.60 -10.72 2.97 -172.78 -0.51 -11.23 16 13 C 0.51 9.18 7.77 -10.99 -0.09 9.10 16 14 O -0.54 -12.02 15.91 -14.35 -0.23 -12.25 16 15 C 0.06 0.77 5.87 36.00 0.21 0.98 16 16 O -0.55 -7.32 13.19 -55.14 -0.73 -8.05 16 17 C 0.10 1.59 6.34 -3.71 -0.02 1.57 16 18 C -0.12 -2.31 5.31 -26.61 -0.14 -2.45 16 19 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 20 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 21 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.09 2.16 6.87 -51.93 -0.36 1.80 16 23 H 0.08 1.58 7.00 -51.93 -0.36 1.21 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 26 H 0.07 0.72 7.94 -51.92 -0.41 0.31 16 27 H 0.38 2.59 9.12 45.56 0.42 3.01 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.78 5.93 -51.93 -0.31 0.47 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 257.07 15.07 3.87 3.87 Total: -1.00 -32.53 257.07 -6.21 -38.74 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.50 Total: 0.00 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.76 Total: -2.80 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.16 Total: -35.35 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.96 Total: -20.29 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.53 -6.21 -38.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.988 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds