Wall clock time and date at job start Sun Mar 29 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99791 * 2 1 4 4 H 1.48499 * 109.47164 * 274.98839 * 3 2 1 5 5 H 1.48496 * 109.47175 * 34.99114 * 3 2 1 6 6 H 1.48506 * 109.46750 * 154.98924 * 3 2 1 7 7 C 1.37874 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99974 * 189.58391 * 7 2 1 9 9 C 1.50701 * 120.00204 * 9.58930 * 7 2 1 10 10 C 1.53071 * 109.44475 * 65.23906 * 9 7 2 11 11 C 1.53187 * 109.29548 * 181.23482 * 10 9 7 12 12 N 1.46920 * 108.89681 * 305.58486 * 11 10 9 13 13 C 1.34783 * 120.62842 * 233.55650 * 12 11 10 14 14 O 1.21279 * 120.00098 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00022 * 179.97438 * 13 12 11 16 16 O 1.42900 * 109.47329 * 180.02562 * 15 13 12 17 17 C 1.46919 * 118.74248 * 53.53585 * 12 11 10 18 18 C 1.53040 * 109.45879 * 185.44890 * 9 7 2 19 19 H 0.96997 * 119.99642 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.45517 * 305.41641 * 9 7 2 21 21 H 1.09006 * 109.38703 * 61.36470 * 10 9 7 22 22 H 1.09000 * 109.62169 * 301.25753 * 10 9 7 23 23 H 1.09000 * 109.58586 * 185.71887 * 11 10 9 24 24 H 1.09003 * 109.58533 * 65.44536 * 11 10 9 25 25 H 1.08998 * 109.47526 * 300.00590 * 15 13 12 26 26 H 1.09009 * 109.47012 * 60.00136 * 15 13 12 27 27 H 0.96705 * 113.99829 * 180.02562 * 16 15 13 28 28 H 1.08994 * 109.58851 * 66.17502 * 17 12 11 29 29 H 1.08999 * 109.58987 * 186.46851 * 17 12 11 30 30 H 1.09002 * 109.49926 * 58.67740 * 18 9 7 31 31 H 1.08999 * 109.52727 * 298.59014 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5033 2.6199 0.8028 6 1 3.5955 1.4120 0.5920 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1563 9 6 1.2668 -2.4901 -0.2163 10 6 0.6866 -2.5154 -1.6325 11 6 -0.0885 -3.8206 -1.8388 12 7 0.7938 -4.9526 -1.5249 13 6 0.9780 -5.9473 -2.4156 14 8 0.4132 -5.9130 -3.4882 15 6 1.8866 -7.1014 -2.0790 16 8 1.9179 -8.0183 -3.1747 17 6 1.4720 -4.9797 -0.2218 18 6 2.2328 -3.6631 -0.0346 19 1 -0.4849 0.8400 -0.0004 20 1 0.4560 -2.5719 0.5077 21 1 1.4986 -2.4561 -2.3574 22 1 0.0147 -1.6679 -1.7680 23 1 -0.4175 -3.8902 -2.8756 24 1 -0.9555 -3.8390 -1.1784 25 1 2.8930 -6.7283 -1.8892 26 1 1.5140 -7.6099 -1.1898 27 1 2.4843 -8.7881 -3.0273 28 1 0.7336 -5.0910 0.5721 29 1 2.1709 -5.8155 -0.1908 30 1 2.6612 -3.6299 0.9672 31 1 3.0309 -3.5958 -0.7739 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306192220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:46 Heat of formation + Delta-G solvation = -117.627320 kcal Electronic energy + Delta-G solvation = -14585.053983 eV Core-core repulsion = 12058.088597 eV Total energy + Delta-G solvation = -2526.965386 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.12655 -38.56489 -37.21732 -35.35798 -33.03543 -32.07370 -29.07504 -27.56179 -24.66312 -23.82909 -21.59908 -19.83546 -19.03782 -18.34272 -17.35976 -16.84960 -16.77719 -16.44863 -15.10607 -14.97211 -14.90762 -14.48713 -14.35876 -13.76588 -13.36027 -13.22257 -13.11128 -12.79501 -12.49314 -12.19721 -11.99530 -11.44655 -11.11868 -11.07207 -10.89389 -10.62054 -10.41986 -9.58561 -8.13009 -6.20979 1.39900 1.42985 1.51278 1.57732 1.92325 2.43395 3.17593 3.38886 3.80802 4.08332 4.28117 4.30270 4.34096 4.38008 4.48248 4.60933 4.67384 4.89117 4.96307 5.15703 5.24616 5.38291 5.50479 5.66826 5.96573 6.00624 6.36707 6.46942 6.91692 6.93069 7.17112 7.46217 8.94864 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061145 B = 0.007245 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.819483 B = 3863.851228 C = 4014.283226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.105 4.105 11 C 0.119 3.881 12 N -0.602 5.602 13 C 0.495 3.505 14 O -0.591 6.591 15 C 0.069 3.931 16 O -0.580 6.580 17 C 0.108 3.892 18 C -0.118 4.118 19 H 0.260 0.740 20 H 0.008 0.992 21 H 0.028 0.972 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.408 0.592 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -12.921 1.710 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.772 3.228 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.023 3.977 10 C -0.144 4.144 11 C -0.004 4.004 12 N -0.336 5.336 13 C 0.285 3.715 14 O -0.472 6.472 15 C -0.011 4.011 16 O -0.389 6.389 17 C -0.013 4.013 18 C -0.156 4.156 19 H 0.069 0.931 20 H 0.027 0.973 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.260 0.740 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.683 -12.371 0.918 13.259 hybrid contribution 0.391 1.151 0.097 1.219 sum 5.073 -11.220 1.015 12.355 Atomic orbital electron populations 1.70066 1.07221 1.27202 1.51180 1.25700 0.95508 1.02281 0.94933 0.85733 0.79179 0.80090 0.77814 1.20794 1.21113 1.18932 1.21578 0.94271 0.92499 1.48714 0.92729 1.18646 0.94210 0.92951 0.91900 1.21716 0.98265 0.94878 0.99500 1.21500 0.92590 0.85863 1.00409 1.48242 1.46409 1.21215 1.17704 1.21378 0.82430 0.84364 0.83319 1.90646 1.51572 1.79318 1.25626 1.21975 0.99345 0.89046 0.90758 1.86532 1.73007 1.37909 1.41498 1.22084 0.96858 0.99332 0.83063 1.21889 0.98073 0.94041 1.01623 0.93097 0.97333 0.95337 0.93002 0.91805 0.91801 0.87549 0.86795 0.74002 0.90351 0.86126 0.90449 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.53 12.15 21.45 0.26 -52.27 16 2 C 0.01 0.80 5.19 84.65 0.44 1.24 16 3 Si 0.95 43.03 29.55 68.60 2.03 45.06 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.53 -28.21 8.48 25.60 0.22 -27.99 16 8 H 0.05 2.83 7.77 -2.91 -0.02 2.80 16 9 C 0.04 1.95 1.92 -11.50 -0.02 1.92 16 10 C -0.10 -4.90 5.21 30.68 0.16 -4.74 16 11 C 0.12 4.83 6.43 86.36 0.55 5.38 16 12 N -0.60 -20.36 2.97 -818.94 -2.44 -22.80 16 13 C 0.50 16.88 7.77 87.65 0.68 17.56 16 14 O -0.59 -26.37 15.91 16.01 0.25 -26.11 16 15 C 0.07 1.43 5.87 71.23 0.42 1.85 16 16 O -0.58 -13.47 13.19 -129.94 -1.71 -15.19 16 17 C 0.11 2.88 6.34 86.37 0.55 3.43 16 18 C -0.12 -4.13 5.31 30.68 0.16 -3.97 16 19 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 20 H 0.01 0.44 8.09 -2.39 -0.02 0.42 16 21 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 22 H 0.05 2.74 6.87 -2.39 -0.02 2.73 16 23 H 0.06 2.73 7.00 -2.39 -0.02 2.71 16 24 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.11 1.61 7.69 -2.39 -0.02 1.59 16 26 H 0.11 1.50 7.94 -2.38 -0.02 1.48 16 27 H 0.41 3.91 9.12 -74.05 -0.68 3.24 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.12 2.02 5.93 -2.39 -0.01 2.00 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -73.12 257.07 2.00 -71.12 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.45 Total: 5.49 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 3.16 Total: -5.30 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.18 Total: -75.07 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.46 Total: -41.30 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.12 2.00 -71.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.506 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds