Wall clock time and date at job start Sun Mar 29 2020 22:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86798 * 119.99850 * 2 1 4 4 H 1.48498 * 109.47259 * 269.99647 * 3 2 1 5 5 H 1.48498 * 109.47232 * 30.00107 * 3 2 1 6 6 H 1.48508 * 109.47308 * 149.99960 * 3 2 1 7 7 C 1.40051 * 120.00473 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00659 * 180.02562 * 7 2 1 9 9 C 1.46380 * 119.99779 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99716 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00227 * 180.02562 * 9 7 2 12 12 O 1.41596 * 120.00190 * 180.02562 * 11 9 7 13 13 C 1.42896 * 114.00215 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46906 * 84.99737 * 13 12 11 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 C 1.53000 * 109.47231 * 204.99596 * 13 12 11 19 19 H 0.96998 * 120.00321 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99801 * 359.97438 * 11 9 7 21 21 H 1.09002 * 109.46984 * 324.99916 * 13 12 11 22 22 H 1.08996 * 109.47853 * 300.00254 * 14 13 12 23 23 H 1.09002 * 109.47153 * 60.00282 * 14 13 12 24 24 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 25 25 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 26 26 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 27 27 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 28 28 H 1.08993 * 109.47194 * 179.97438 * 17 16 15 29 29 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 30 30 H 1.08992 * 109.47399 * 300.00058 * 18 13 12 31 31 H 1.09004 * 109.46724 * 60.00544 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4402 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0016 12 8 1.2411 -4.8740 0.0010 13 6 2.0810 -6.0301 0.0017 14 6 2.4814 -6.3687 1.4390 15 6 3.3802 -7.6068 1.4399 16 6 2.6223 -8.7877 0.8298 17 6 2.2219 -8.4491 -0.6075 18 6 1.3236 -7.2112 -0.6084 19 1 -0.4850 0.8400 -0.0004 20 1 2.9191 -3.6477 0.0020 21 1 2.9761 -5.8292 -0.5871 22 1 3.0210 -5.5273 1.8738 23 1 1.5864 -6.5696 2.0278 24 1 3.6651 -7.8484 2.4639 25 1 4.2753 -7.4064 0.8510 26 1 1.7272 -8.9881 1.4187 27 1 3.2628 -9.6697 0.8300 28 1 1.6824 -9.2905 -1.0422 29 1 3.1170 -8.2486 -1.1963 30 1 0.4286 -7.4120 -0.0197 31 1 1.0384 -6.9699 -1.6325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306199820.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:39 Heat of formation + Delta-G solvation = -85.159124 kcal Electronic energy + Delta-G solvation = -14217.280777 eV Core-core repulsion = 11691.723319 eV Total energy + Delta-G solvation = -2525.557459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08573 -38.90406 -36.83490 -34.67283 -32.69909 -31.74557 -30.21006 -28.05320 -23.60975 -23.28369 -22.32358 -20.82194 -19.49070 -18.29010 -17.55577 -16.57362 -15.94650 -15.74680 -15.17498 -14.99671 -14.81951 -14.36842 -13.87242 -13.77372 -13.23188 -13.18189 -12.79032 -12.70450 -12.50436 -12.10978 -12.00461 -11.92469 -11.51050 -11.34809 -11.00583 -10.90614 -9.99898 -9.34838 -8.35572 -6.95023 1.38434 1.45493 1.55660 1.67002 2.31499 2.43431 3.56320 3.66292 3.74329 3.77830 4.08744 4.22054 4.24356 4.43175 4.49894 4.52988 4.65331 4.91235 5.06788 5.09998 5.17048 5.20682 5.27214 5.28762 5.34663 5.48820 5.63999 6.11214 6.54177 6.78013 7.37921 8.44302 8.61780 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068578 B = 0.006113 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.196431 B = 4579.180457 C = 4784.345152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.013 2.987 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.244 1.244 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.546 3.454 10 O -0.624 6.624 11 N -0.616 5.616 12 O -0.195 6.195 13 C 0.056 3.944 14 C -0.139 4.139 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.106 4.106 18 C -0.111 4.111 19 H 0.278 0.722 20 H 0.403 0.597 21 H 0.076 0.924 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.670 -12.718 0.619 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.167 1.167 7 C -0.596 4.596 8 H 0.119 0.881 9 C 0.352 3.648 10 O -0.510 6.510 11 N -0.323 5.323 12 O -0.198 6.198 13 C -0.002 4.002 14 C -0.177 4.177 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.144 4.144 18 C -0.150 4.150 19 H 0.088 0.912 20 H 0.243 0.757 21 H 0.094 0.906 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.398 -12.697 0.627 15.809 hybrid contribution 0.319 0.524 0.053 0.615 sum 9.716 -12.173 0.681 15.590 Atomic orbital electron populations 1.70209 1.09868 1.29484 1.35656 1.27129 0.95636 1.05150 0.90934 0.84810 0.78622 0.73912 0.79621 1.18324 1.19737 1.16685 1.21215 0.95050 0.87800 1.55576 0.88135 1.19109 0.87400 0.81846 0.76494 1.90563 1.16483 1.86579 1.57330 1.47920 1.06373 0.94602 1.83418 1.90502 1.25329 1.06884 1.97122 1.22785 0.94863 0.85315 0.97255 1.22050 1.00304 0.99397 0.95958 1.21496 0.97878 0.93263 1.02095 1.21600 1.00557 0.98122 0.95495 1.21483 0.99364 0.95679 0.97851 1.21573 0.99225 0.93606 1.00555 0.91157 0.75725 0.90569 0.92761 0.92818 0.90527 0.90863 0.92228 0.89443 0.89669 0.90790 0.92179 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.18 11.83 21.84 0.26 -50.92 16 2 C 0.03 1.49 5.50 85.31 0.47 1.96 16 3 Si 1.01 40.19 29.56 68.60 2.03 42.22 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.24 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.56 -31.94 9.54 24.83 0.24 -31.70 16 8 H 0.10 4.96 7.85 -2.92 -0.02 4.94 16 9 C 0.55 33.81 7.89 86.36 0.68 34.49 16 10 O -0.62 -45.37 15.43 13.02 0.20 -45.17 16 11 N -0.62 -30.80 6.37 -176.62 -1.13 -31.93 16 12 O -0.19 -9.35 10.75 -21.44 -0.23 -9.58 16 13 C 0.06 1.84 2.74 30.59 0.08 1.93 16 14 C -0.14 -3.99 5.57 30.59 0.17 -3.82 16 15 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 16 C -0.12 -2.05 5.92 30.60 0.18 -1.87 16 17 C -0.11 -1.98 5.92 30.58 0.18 -1.79 16 18 C -0.11 -3.05 5.57 30.58 0.17 -2.88 16 19 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 20 H 0.40 16.56 8.41 -92.71 -0.78 15.79 16 21 H 0.08 2.28 7.94 -2.39 -0.02 2.26 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -80.01 263.75 3.82 -76.19 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.34 Total: 24.86 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 2.36 Total: -5.67 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -0.87 Total: -82.85 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -0.03 Total: -54.75 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -80.01 3.82 -76.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306199820.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.974 kcal (2) G-P(sol) polarization free energy of solvation -80.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds