Wall clock time and date at job start Sun Mar 29 2020 21:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.48647 * 2 1 4 4 C 1.53052 * 109.49041 * 239.96287 * 2 1 3 5 5 H 1.09000 * 109.50220 * 301.58408 * 4 2 1 6 6 C 1.53000 * 109.49158 * 61.63819 * 4 2 1 7 7 N 1.46952 * 109.36421 * 181.61284 * 4 2 1 8 8 C 1.46899 * 110.99951 * 183.18693 * 7 4 2 9 9 C 1.50703 * 109.47107 * 169.99745 * 8 7 4 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47171 * 89.99544 * 13 11 9 15 15 H 1.48500 * 109.46632 * 209.99795 * 13 11 9 16 16 H 1.48494 * 109.47053 * 329.99231 * 13 11 9 17 17 C 1.46957 * 110.88258 * 59.31498 * 7 4 2 18 18 C 1.53051 * 109.36288 * 300.68138 * 17 7 4 19 19 N 1.46948 * 109.36666 * 58.40430 * 18 17 7 20 20 C 1.46894 * 111.00364 * 176.80971 * 19 18 17 21 21 H 1.08998 * 109.47187 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47296 * 300.04092 * 1 2 3 23 23 H 1.09008 * 109.46832 * 60.04000 * 1 2 3 24 24 H 1.08999 * 109.46993 * 179.89243 * 6 4 2 25 25 H 1.09002 * 109.46982 * 299.89547 * 6 4 2 26 26 H 1.09004 * 109.46744 * 59.89401 * 6 4 2 27 27 H 1.09002 * 109.47043 * 289.99725 * 8 7 4 28 28 H 1.09001 * 109.47354 * 49.99787 * 8 7 4 29 29 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.48679 * 60.64784 * 17 7 4 31 31 H 1.09002 * 109.48992 * 180.71260 * 17 7 4 32 32 H 1.09000 * 109.49159 * 298.42901 * 18 17 7 33 33 H 1.09006 * 109.50306 * 178.37924 * 18 17 7 34 34 H 1.08999 * 109.47709 * 183.79448 * 20 19 18 35 35 H 1.08997 * 109.46947 * 303.80066 * 20 19 18 36 36 H 1.09000 * 109.47485 * 63.79236 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2490 5 1 1.6548 -1.7415 -1.2633 6 6 1.5651 0.0212 -2.4989 7 7 3.5097 -0.7545 -1.2269 8 6 4.0411 -1.3740 -2.4482 9 6 5.5333 -1.1711 -2.5060 10 1 6.0364 -0.6351 -1.7149 11 6 6.2560 -1.6688 -3.5695 12 7 5.6433 -2.3211 -4.5332 13 14 8.1058 -1.4179 -3.6408 14 1 8.7857 -2.5537 -2.9680 15 1 8.5416 -1.3497 -5.0588 16 1 8.4603 -0.1508 -2.9526 17 6 4.0004 -1.4483 -0.0279 18 6 3.4897 -0.7259 1.2211 19 7 2.0207 -0.6938 1.1990 20 6 1.4892 -0.0742 2.4202 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5145 0.8896 23 1 -0.3633 0.5133 -0.8904 24 1 1.9306 -0.4924 -3.3881 25 1 0.4755 0.0449 -2.5149 26 1 1.9506 1.0407 -2.4838 27 1 3.8196 -2.4413 -2.4402 28 1 3.5777 -0.9133 -3.3206 29 1 6.1516 -2.6709 -5.2816 30 1 3.6367 -2.4758 -0.0280 31 1 5.0904 -1.4479 -0.0281 32 1 3.8756 0.2933 1.2351 33 1 3.8285 -1.2553 2.1117 34 1 0.4004 -0.1239 2.4087 35 1 1.8681 -0.6070 3.2924 36 1 1.8049 0.9680 2.4659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306218764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:46 Heat of formation + Delta-G solvation = 9.507763 kcal Electronic energy + Delta-G solvation = -15064.814740 eV Core-core repulsion = 12776.914102 eV Total energy + Delta-G solvation = -2287.900638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.17862 -35.30661 -33.10513 -32.35265 -28.76654 -28.23439 -26.04966 -25.43594 -22.91287 -21.28279 -20.44656 -18.95288 -16.41783 -15.43157 -15.24296 -14.72802 -14.42865 -14.26959 -13.49336 -13.10886 -12.75183 -12.49297 -12.23559 -12.15858 -11.70640 -11.33558 -11.17069 -11.14269 -11.04007 -10.76561 -10.60486 -10.43489 -10.19497 -10.05946 -9.44032 -9.10336 -8.39159 -8.04383 -7.16304 -5.99823 -4.00584 3.33087 3.39201 3.43543 4.19049 4.44215 4.88742 5.14150 5.30650 5.34987 5.44988 5.57310 5.63285 5.78651 5.79649 5.88764 5.92497 5.96542 6.02285 6.06168 6.20504 6.25088 6.45577 6.54733 6.69650 6.75782 6.82801 7.28721 7.35372 7.42483 7.45998 7.84429 8.15377 8.27574 8.61319 9.07007 9.63164 11.11063 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045910 B = 0.008301 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.745758 B = 3372.331214 C = 3815.070305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 H 0.045 0.955 4 C 0.088 3.912 5 H 0.036 0.964 6 C -0.145 4.145 7 N -0.535 5.535 8 C 0.189 3.811 9 C -0.506 4.506 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.067 3.933 18 C 0.057 3.943 19 N -0.542 5.542 20 C 0.024 3.976 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.058 0.942 27 H -0.011 1.011 28 H 0.039 0.961 29 H 0.261 0.739 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 3.992 9.572 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.063 0.937 4 C -0.021 4.021 5 H 0.054 0.946 6 C -0.203 4.203 7 N -0.261 5.261 8 C 0.064 3.936 9 C -0.544 4.544 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.724 3.276 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.062 4.062 18 C -0.071 4.071 19 N -0.267 5.267 20 C -0.125 4.125 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.007 0.993 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.239 3.901 9.393 13.089 hybrid contribution 1.061 0.035 -0.106 1.067 sum -7.178 3.936 9.287 12.380 Atomic orbital electron populations 1.21947 0.94877 1.02248 1.01348 1.21697 0.94368 0.95951 0.89933 0.93745 1.21537 0.90106 0.97287 0.93214 0.94614 1.21934 0.99263 1.01150 0.97947 1.62288 1.04937 1.54777 1.04055 1.19805 0.95247 0.92141 0.86375 1.21174 0.92014 1.34642 1.06614 0.92016 1.24981 0.98638 0.95374 0.95628 1.69958 1.35751 1.37607 1.10560 0.86522 0.85407 0.78515 0.77118 1.20770 1.21280 1.19843 1.21985 1.00632 0.94750 0.88787 1.22244 0.86469 0.99635 0.98712 1.62168 1.09145 1.53512 1.01895 1.22375 1.00561 0.96761 0.92771 0.92088 0.92923 0.91870 0.91375 0.93097 0.92335 0.99316 0.94308 0.92975 0.95403 0.89560 0.94487 0.91223 0.91421 0.91909 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.54 37.16 0.32 -1.58 16 2 C 0.09 1.44 2.07 -67.65 -0.14 1.30 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.09 1.68 2.07 -67.66 -0.14 1.54 16 5 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.15 -2.56 8.58 37.16 0.32 -2.24 16 7 N -0.54 -11.95 4.52 -227.93 -1.03 -12.98 16 8 C 0.19 5.00 4.49 -4.98 -0.02 4.98 16 9 C -0.51 -14.34 8.47 -34.44 -0.29 -14.64 16 10 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 13 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 18 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 19 N -0.54 -8.62 4.78 -234.74 -1.12 -9.75 16 20 C 0.02 0.30 9.13 60.06 0.55 0.84 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.59 6.37 -51.93 -0.33 0.26 16 23 H 0.06 0.76 6.48 -51.92 -0.34 0.42 16 24 H 0.07 1.34 6.15 -51.93 -0.32 1.02 16 25 H 0.05 0.74 6.48 -51.93 -0.34 0.40 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 28 H 0.04 1.08 5.73 -51.93 -0.30 0.78 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.86 6.79 -51.93 -0.35 1.50 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 34 H 0.07 0.76 6.25 -51.93 -0.32 0.43 16 35 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 274.36 15.07 4.13 4.13 Total: -1.00 -29.91 274.36 -7.88 -37.80 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.03 Total: -3.79 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 0.45 Total: -6.02 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -1.42 Total: -48.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.91 -7.88 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.305 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds