Wall clock time and date at job start Sun Mar 29 2020 21:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.48647 * 2 1 4 4 C 1.53052 * 109.49041 * 239.96287 * 2 1 3 5 5 H 1.09000 * 109.50220 * 301.58408 * 4 2 1 6 6 C 1.53000 * 109.49158 * 61.63819 * 4 2 1 7 7 N 1.46952 * 109.36421 * 181.61284 * 4 2 1 8 8 C 1.46899 * 110.99951 * 183.18693 * 7 4 2 9 9 C 1.50703 * 109.47107 * 169.99745 * 8 7 4 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47171 * 89.99544 * 13 11 9 15 15 H 1.48500 * 109.46632 * 209.99795 * 13 11 9 16 16 H 1.48494 * 109.47053 * 329.99231 * 13 11 9 17 17 C 1.46957 * 110.88258 * 59.31498 * 7 4 2 18 18 C 1.53051 * 109.36288 * 300.68138 * 17 7 4 19 19 N 1.46948 * 109.36666 * 58.40430 * 18 17 7 20 20 C 1.46894 * 111.00364 * 176.80971 * 19 18 17 21 21 H 1.08998 * 109.47187 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47296 * 300.04092 * 1 2 3 23 23 H 1.09008 * 109.46832 * 60.04000 * 1 2 3 24 24 H 1.08999 * 109.46993 * 179.89243 * 6 4 2 25 25 H 1.09002 * 109.46982 * 299.89547 * 6 4 2 26 26 H 1.09004 * 109.46744 * 59.89401 * 6 4 2 27 27 H 1.09002 * 109.47043 * 289.99725 * 8 7 4 28 28 H 1.09001 * 109.47354 * 49.99787 * 8 7 4 29 29 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.48679 * 60.64784 * 17 7 4 31 31 H 1.09002 * 109.48992 * 180.71260 * 17 7 4 32 32 H 1.09000 * 109.49159 * 298.42901 * 18 17 7 33 33 H 1.09006 * 109.50306 * 178.37924 * 18 17 7 34 34 H 1.08999 * 109.47709 * 183.79448 * 20 19 18 35 35 H 1.08997 * 109.46947 * 303.80066 * 20 19 18 36 36 H 1.09000 * 109.47485 * 63.79236 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2490 5 1 1.6548 -1.7415 -1.2633 6 6 1.5651 0.0212 -2.4989 7 7 3.5097 -0.7545 -1.2269 8 6 4.0411 -1.3740 -2.4482 9 6 5.5333 -1.1711 -2.5060 10 1 6.0364 -0.6351 -1.7149 11 6 6.2560 -1.6688 -3.5695 12 7 5.6433 -2.3211 -4.5332 13 14 8.1058 -1.4179 -3.6408 14 1 8.7857 -2.5537 -2.9680 15 1 8.5416 -1.3497 -5.0588 16 1 8.4603 -0.1508 -2.9526 17 6 4.0004 -1.4483 -0.0279 18 6 3.4897 -0.7259 1.2211 19 7 2.0207 -0.6938 1.1990 20 6 1.4892 -0.0742 2.4202 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5145 0.8896 23 1 -0.3633 0.5133 -0.8904 24 1 1.9306 -0.4924 -3.3881 25 1 0.4755 0.0449 -2.5149 26 1 1.9506 1.0407 -2.4838 27 1 3.8196 -2.4413 -2.4402 28 1 3.5777 -0.9133 -3.3206 29 1 6.1516 -2.6709 -5.2816 30 1 3.6367 -2.4758 -0.0280 31 1 5.0904 -1.4479 -0.0281 32 1 3.8756 0.2933 1.2351 33 1 3.8285 -1.2553 2.1117 34 1 0.4004 -0.1239 2.4087 35 1 1.8681 -0.6070 3.2924 36 1 1.8049 0.9680 2.4659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:45 Heat of formation + Delta-G solvation = -12.161164 kcal Electronic energy + Delta-G solvation = -15065.754375 eV Core-core repulsion = 12776.914102 eV Total energy + Delta-G solvation = -2288.840273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63449 -36.90311 -34.77145 -34.21209 -30.45059 -29.55640 -27.89245 -26.68606 -24.72048 -22.75281 -22.05594 -20.45888 -18.54466 -16.91785 -16.81250 -16.28465 -16.21325 -15.55372 -15.11890 -14.73717 -14.16843 -14.07842 -13.85199 -13.46052 -13.09384 -12.93448 -12.76611 -12.55142 -12.53334 -12.43853 -12.28237 -12.11132 -11.81966 -11.69112 -11.21173 -11.01083 -10.58752 -9.29052 -9.02293 -8.20709 -6.30680 1.39785 1.41379 1.53013 2.39548 2.97698 3.10997 3.24005 3.83718 4.05930 4.11958 4.29635 4.38657 4.44510 4.53325 4.61528 4.66301 4.72213 4.82690 4.91182 4.93963 4.95978 5.01564 5.10686 5.13623 5.25708 5.29135 5.36337 5.42167 5.64614 6.03563 6.11815 6.16148 6.39355 6.66103 6.85318 7.38654 8.90551 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045910 B = 0.008301 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.745758 B = 3372.331214 C = 3815.070305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.095 3.905 3 H 0.038 0.962 4 C 0.082 3.918 5 H 0.018 0.982 6 C -0.138 4.138 7 N -0.541 5.541 8 C 0.206 3.794 9 C -0.524 4.524 10 H 0.061 0.939 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.970 3.030 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.265 1.265 17 C 0.067 3.933 18 C 0.068 3.932 19 N -0.555 5.555 20 C 0.025 3.975 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.087 0.913 26 H 0.057 0.943 27 H -0.049 1.049 28 H 0.020 0.980 29 H 0.264 0.736 30 H 0.012 0.988 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 5.111 11.196 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.014 4.014 3 H 0.056 0.944 4 C -0.027 4.027 5 H 0.036 0.964 6 C -0.196 4.196 7 N -0.266 5.266 8 C 0.080 3.920 9 C -0.562 4.562 10 H 0.079 0.921 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.794 3.206 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.062 4.062 18 C -0.060 4.060 19 N -0.280 5.280 20 C -0.123 4.123 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.076 0.924 27 H -0.031 1.031 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.648 5.030 11.045 14.902 hybrid contribution 1.125 -0.338 -0.596 1.318 sum -7.523 4.692 10.448 13.703 Atomic orbital electron populations 1.21908 0.91945 1.02648 1.03157 1.21642 0.96547 0.94720 0.88504 0.94408 1.21721 0.87909 0.97092 0.95939 0.96424 1.21874 1.01502 1.00240 0.95952 1.62264 1.07291 1.54065 1.03027 1.19448 0.94836 0.89827 0.87936 1.21465 0.93062 1.34851 1.06831 0.92113 1.25921 1.03932 0.94774 0.95041 1.70090 1.37861 1.38368 1.11203 0.85375 0.78927 0.78858 0.77410 1.19818 1.20606 1.18938 1.21985 0.99736 0.94472 0.89977 1.22105 0.87520 0.99100 0.97251 1.62169 1.08243 1.54396 1.03207 1.22465 1.01555 0.96950 0.91315 0.92335 0.90526 0.90725 0.94357 0.89462 0.92402 1.03095 0.96168 0.92679 0.97007 0.91314 0.94737 0.88754 0.89663 0.90494 0.95565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.54 71.98 0.62 -2.54 16 2 C 0.09 2.89 2.07 44.92 0.09 2.98 16 3 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.08 3.17 2.07 44.92 0.09 3.26 16 5 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 6 C -0.14 -4.87 8.58 71.98 0.62 -4.26 16 7 N -0.54 -24.92 4.52 -875.03 -3.95 -28.87 16 8 C 0.21 11.44 4.49 85.56 0.38 11.82 16 9 C -0.52 -30.60 8.47 25.60 0.22 -30.38 16 10 H 0.06 3.48 7.13 -2.91 -0.02 3.46 16 11 C 0.00 0.07 5.46 84.65 0.46 0.53 16 12 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 13 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 C 0.07 2.80 5.43 86.31 0.47 3.27 16 18 C 0.07 2.22 5.62 86.31 0.49 2.70 16 19 N -0.55 -16.46 4.78 -896.57 -4.29 -20.74 16 20 C 0.02 0.52 9.13 127.69 1.17 1.69 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.40 6.37 -2.39 -0.02 1.39 16 23 H 0.07 1.53 6.48 -2.38 -0.02 1.51 16 24 H 0.04 1.56 6.15 -2.39 -0.01 1.54 16 25 H 0.09 2.39 6.48 -2.39 -0.02 2.38 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 27 H -0.05 -3.00 8.12 -2.39 -0.02 -3.02 16 28 H 0.02 1.19 5.73 -2.39 -0.01 1.18 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 3.06 6.79 -2.39 -0.02 3.04 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 2.58 8.13 -2.38 -0.02 2.56 16 34 H 0.08 1.54 6.25 -2.39 -0.01 1.52 16 35 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 36 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -66.06 274.36 -0.30 -66.36 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.03 Total: 4.21 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.60 Total: -10.92 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -7.96 Total: -106.75 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.06 -0.30 -66.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.200 kcal (2) G-P(sol) polarization free energy of solvation -66.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds