Wall clock time and date at job start Sun Mar 29 2020 21:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.51041 * 2 1 4 4 C 1.53055 * 109.48999 * 120.05724 * 2 1 3 5 5 H 1.08998 * 109.48777 * 58.40190 * 4 2 1 6 6 C 1.53002 * 109.48419 * 298.33533 * 4 2 1 7 7 N 1.46957 * 109.36247 * 178.36784 * 4 2 1 8 8 C 1.46904 * 110.99468 * 176.81139 * 7 4 2 9 9 C 1.50696 * 109.47416 * 64.60996 * 8 7 4 10 10 H 1.08001 * 119.99846 * 354.54633 * 9 8 7 11 11 C 1.37875 * 120.00170 * 174.55061 * 9 8 7 12 12 N 1.31510 * 119.99903 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99864 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47448 * 59.99630 * 13 11 9 15 15 H 1.48503 * 109.46666 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46942 * 299.99641 * 13 11 9 17 17 C 1.46951 * 110.88231 * 300.67582 * 7 4 2 18 18 C 1.53051 * 109.36300 * 59.32030 * 17 7 4 19 19 N 1.46949 * 109.36904 * 301.60062 * 18 17 7 20 20 C 1.46896 * 111.00371 * 183.18640 * 19 18 17 21 21 H 1.09002 * 109.47199 * 299.94394 * 1 2 3 22 22 H 1.09002 * 109.47055 * 59.94470 * 1 2 3 23 23 H 1.08997 * 109.47189 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47051 * 300.10413 * 6 4 2 25 25 H 1.08994 * 109.47199 * 60.11132 * 6 4 2 26 26 H 1.09001 * 109.46637 * 180.10860 * 6 4 2 27 27 H 1.09001 * 109.47121 * 304.61030 * 8 7 4 28 28 H 1.08998 * 109.46455 * 184.60875 * 8 7 4 29 29 H 0.97001 * 120.00152 * 180.02562 * 12 11 9 30 30 H 1.08994 * 109.49180 * 179.28898 * 17 7 4 31 31 H 1.09003 * 109.49203 * 299.35947 * 17 7 4 32 32 H 1.08999 * 109.49122 * 181.63178 * 18 17 7 33 33 H 1.09007 * 109.48733 * 61.57050 * 18 17 7 34 34 H 1.09000 * 109.46880 * 296.20023 * 20 19 18 35 35 H 1.09000 * 109.47374 * 56.19883 * 20 19 18 36 36 H 1.08999 * 109.47348 * 176.20039 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0407 -0.7227 1.2488 5 1 1.6545 -1.7418 1.2626 6 6 1.5656 0.0208 2.4988 7 7 3.5097 -0.7553 1.2264 8 6 4.0411 -1.3753 2.4476 9 6 3.6209 -2.8215 2.5006 10 1 2.9475 -3.2158 1.7540 11 6 4.0961 -3.6412 3.5022 12 7 4.9165 -3.1612 4.4110 13 14 3.5757 -5.4342 3.5673 14 1 3.9936 -6.1167 2.3166 15 1 4.2207 -6.0947 4.7305 16 1 2.0996 -5.5164 3.7066 17 6 4.0000 -1.4491 0.0273 18 6 3.4893 -0.7265 -1.2215 19 7 2.0203 -0.6938 -1.1991 20 6 1.4888 -0.0739 -2.4202 21 1 -0.3634 0.5130 0.8905 22 1 -0.3633 0.5147 -0.8895 23 1 -0.3633 -1.0276 -0.0005 24 1 1.9513 1.0401 2.4839 25 1 0.4760 0.0448 2.5151 26 1 1.9310 -0.4930 3.3880 27 1 3.6512 -0.8514 3.3203 28 1 5.1293 -1.3130 2.4426 29 1 5.2511 -3.7379 5.1155 30 1 5.0899 -1.4491 0.0273 31 1 3.6360 -2.4766 0.0272 32 1 3.8277 -1.2561 -2.1121 33 1 3.8756 0.2927 -1.2354 34 1 1.8048 0.9683 -2.4657 35 1 1.8673 -0.6067 -3.2926 36 1 0.4000 -0.1233 -2.4085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:48 Heat of formation + Delta-G solvation = -12.172772 kcal Electronic energy + Delta-G solvation = -15265.887584 eV Core-core repulsion = 12977.046807 eV Total energy + Delta-G solvation = -2288.840777 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62747 -36.96720 -34.59695 -34.18956 -30.37619 -29.44021 -27.71049 -26.68436 -24.88862 -22.69212 -22.00960 -20.51404 -18.32108 -16.94432 -16.89553 -16.27131 -16.16107 -15.38788 -15.26343 -14.66630 -14.08667 -13.92826 -13.53706 -13.40990 -13.26783 -12.95042 -12.78147 -12.58581 -12.48794 -12.27047 -12.12042 -12.07535 -11.81169 -11.68952 -11.44856 -10.98805 -10.57013 -9.24128 -8.99373 -8.14236 -6.33072 1.35716 1.37012 1.45370 2.37315 3.02129 3.09731 3.33437 3.92168 4.12529 4.16577 4.38318 4.47731 4.50835 4.62538 4.67076 4.68937 4.76672 4.85799 4.90813 4.96200 5.05809 5.12653 5.18583 5.24346 5.31384 5.34218 5.42726 5.48560 5.77265 6.07191 6.14850 6.18638 6.36834 6.58036 6.87656 7.37569 8.87651 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.009288 C = 0.008988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.157722 B = 3013.947094 C = 3114.630977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.093 3.907 3 H 0.040 0.960 4 C 0.094 3.906 5 H 0.020 0.980 6 C -0.135 4.135 7 N -0.542 5.542 8 C 0.198 3.802 9 C -0.550 4.550 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.926 5.926 13 Si 0.954 3.046 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.271 1.271 17 C 0.065 3.935 18 C 0.069 3.931 19 N -0.557 5.557 20 C 0.025 3.975 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.037 0.963 27 H 0.017 0.983 28 H 0.001 0.999 29 H 0.265 0.735 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 6.130 -10.813 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 H 0.058 0.942 4 C -0.015 4.015 5 H 0.038 0.962 6 C -0.193 4.193 7 N -0.266 5.266 8 C 0.072 3.928 9 C -0.589 4.589 10 H 0.068 0.932 11 C -0.187 4.187 12 N -0.566 5.566 13 Si 0.779 3.221 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.196 1.196 17 C -0.064 4.064 18 C -0.059 4.059 19 N -0.282 5.282 20 C -0.122 4.122 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.758 6.099 -10.665 14.531 hybrid contribution 0.326 -1.165 0.560 1.333 sum -7.432 4.934 -10.106 13.480 Atomic orbital electron populations 1.21903 0.92444 1.02357 1.03017 1.21676 0.96307 0.94770 0.88786 0.94192 1.21495 0.87845 0.97139 0.95017 0.96205 1.21805 1.01101 0.99854 0.96537 1.62653 1.08301 1.52557 1.03064 1.19453 0.93752 0.91598 0.88012 1.21884 1.28289 0.97289 1.11482 0.93168 1.25770 0.94889 1.02826 0.95178 1.70050 1.33331 1.37671 1.15513 0.85675 0.78672 0.80050 0.77706 1.19740 1.20505 1.19598 1.21923 0.98669 0.95763 0.90019 1.22109 0.87452 0.99063 0.97320 1.62122 1.08437 1.54540 1.03147 1.22451 1.01430 0.96967 0.91361 0.90836 0.90528 0.92837 0.92259 0.90332 0.94357 0.96511 0.98099 0.92632 0.92086 0.96083 0.89088 0.94469 0.95384 0.90636 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.54 71.98 0.62 -2.83 16 2 C 0.09 2.94 2.07 44.92 0.09 3.03 16 3 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 4 C 0.09 3.76 1.77 44.92 0.08 3.84 16 5 H 0.02 0.93 6.76 -2.39 -0.02 0.91 16 6 C -0.14 -4.97 8.56 71.98 0.62 -4.35 16 7 N -0.54 -24.43 4.73 -875.03 -4.14 -28.57 16 8 C 0.20 10.74 4.81 85.55 0.41 11.15 16 9 C -0.55 -31.42 7.65 25.60 0.20 -31.22 16 10 H 0.05 2.89 5.83 -2.91 -0.02 2.88 16 11 C 0.01 0.73 5.46 84.65 0.46 1.19 16 12 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 13 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 17 C 0.07 2.71 5.24 86.31 0.45 3.16 16 18 C 0.07 2.21 5.62 86.31 0.49 2.70 16 19 N -0.56 -17.08 4.78 -896.56 -4.29 -21.37 16 20 C 0.03 0.56 9.13 127.69 1.17 1.73 16 21 H 0.07 1.65 6.48 -2.39 -0.02 1.63 16 22 H 0.08 1.51 6.36 -2.39 -0.02 1.50 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.08 2.36 6.48 -2.39 -0.02 2.35 16 26 H 0.04 1.65 6.26 -2.39 -0.01 1.63 16 27 H 0.02 0.96 5.99 -2.39 -0.01 0.95 16 28 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.02 0.98 6.64 -2.39 -0.02 0.96 16 32 H 0.09 2.51 8.13 -2.39 -0.02 2.49 16 33 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 36 H 0.08 1.59 6.25 -2.39 -0.01 1.57 16 Total: -1.00 -63.73 271.11 -0.51 -64.23 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.04 Total: 5.94 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 4.58 Total: -11.62 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -8.14 Total: -105.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.73 -0.51 -64.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.059 kcal (2) G-P(sol) polarization free energy of solvation -63.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds