Wall clock time and date at job start Sun Mar 29 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48735 * 2 1 4 4 C 1.53049 * 109.49022 * 239.95301 * 2 1 3 5 5 H 1.09006 * 109.49101 * 178.44417 * 4 2 1 6 6 C 1.53006 * 109.48808 * 58.38211 * 4 2 1 7 7 N 1.46958 * 109.36731 * 298.39307 * 4 2 1 8 8 C 1.46905 * 110.99858 * 176.83515 * 7 4 2 9 9 C 1.50698 * 109.47170 * 57.77089 * 8 7 4 10 10 H 1.07997 * 120.00108 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99727 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99758 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 119.99984 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47164 * 89.99906 * 13 11 9 15 15 H 1.48497 * 109.47215 * 209.99778 * 13 11 9 16 16 H 1.48501 * 109.47184 * 329.99901 * 13 11 9 17 17 C 1.46952 * 110.89533 * 300.71096 * 7 4 2 18 18 C 1.53049 * 109.36804 * 59.30924 * 17 7 4 19 19 N 1.46956 * 109.48693 * 120.04484 * 2 1 3 20 20 C 1.46901 * 110.99929 * 296.80106 * 19 2 1 21 21 H 1.08995 * 109.47504 * 300.00163 * 1 2 3 22 22 H 1.08998 * 109.47109 * 60.00392 * 1 2 3 23 23 H 1.09002 * 109.47158 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46757 * 59.99931 * 6 4 2 25 25 H 1.08997 * 109.46842 * 179.97438 * 6 4 2 26 26 H 1.09000 * 109.46825 * 299.99820 * 6 4 2 27 27 H 1.08999 * 109.46747 * 177.77738 * 8 7 4 28 28 H 1.09001 * 109.46539 * 297.77210 * 8 7 4 29 29 H 0.96998 * 119.99345 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.49446 * 299.34229 * 17 7 4 31 31 H 1.09002 * 109.50770 * 179.29132 * 17 7 4 32 32 H 1.09004 * 109.49414 * 181.63101 * 18 17 7 33 33 H 1.09006 * 109.50271 * 61.57312 * 18 17 7 34 34 H 1.08996 * 109.47312 * 59.99851 * 20 19 2 35 35 H 1.09000 * 109.47473 * 180.02562 * 20 19 2 36 36 H 1.09009 * 109.47251 * 300.00289 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2489 5 1 3.1303 -0.6983 -1.2630 6 6 1.4981 -0.0265 -2.4988 7 7 1.5817 -2.1183 -1.2263 8 6 1.9892 -2.8263 -2.4473 9 6 3.4885 -2.7662 -2.5862 10 1 4.0797 -2.2538 -1.8417 11 6 4.1056 -3.3663 -3.6633 12 7 5.4142 -3.3143 -3.7843 13 14 3.0831 -4.2532 -4.9506 14 1 2.6975 -3.2982 -6.0205 15 1 3.8793 -5.3601 -5.5387 16 1 1.8596 -4.8061 -4.3161 17 6 2.0720 -2.8119 -0.0271 18 6 1.5609 -2.0894 1.2216 19 7 2.0202 -0.6936 1.1992 20 6 1.6129 0.0143 2.4203 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8374 1.0093 -2.5141 25 1 1.8623 -0.5409 -3.3881 26 1 0.4085 -0.0517 -2.4847 27 1 1.6711 -3.8671 -2.3871 28 1 1.5248 -2.3540 -3.3131 29 1 5.8483 -3.7362 -4.5422 30 1 3.1620 -2.8115 -0.0268 31 1 1.7087 -3.8396 -0.0269 32 1 1.9472 -2.5851 2.1123 33 1 0.4712 -2.1135 1.2356 34 1 0.5250 0.0642 2.4656 35 1 1.9891 -0.5200 3.2927 36 1 2.0227 1.0243 2.4086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306218767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:53 Heat of formation + Delta-G solvation = 15.432218 kcal Electronic energy + Delta-G solvation = -15397.913741 eV Core-core repulsion = 13110.270007 eV Total energy + Delta-G solvation = -2287.643734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40550 -35.44501 -32.62706 -32.16209 -29.18784 -27.92307 -26.19934 -25.43987 -23.06323 -21.68773 -20.43734 -18.03905 -16.52227 -15.71734 -15.27720 -14.71150 -14.25405 -14.21358 -13.86076 -13.02074 -12.54145 -12.28600 -12.23405 -11.99916 -11.90729 -11.46585 -11.23000 -11.07218 -10.96033 -10.77762 -10.50539 -10.17888 -10.03605 -9.90131 -9.63350 -9.37668 -8.55654 -7.93480 -7.10924 -6.06631 -4.05746 3.28639 3.36631 3.40279 4.29363 4.41965 4.94538 5.25172 5.28809 5.33331 5.52306 5.57951 5.73394 5.79984 5.89206 5.96633 5.99514 6.02059 6.10841 6.22514 6.29479 6.38687 6.57143 6.69901 6.84028 6.87575 6.98123 7.02339 7.15892 7.41616 7.47037 7.62029 8.12666 8.17665 8.49850 8.98280 9.56363 11.06388 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045393 B = 0.009475 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.683061 B = 2954.380084 C = 3101.880935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.074 0.926 4 C 0.095 3.905 5 H 0.061 0.939 6 C -0.141 4.141 7 N -0.529 5.529 8 C 0.152 3.848 9 C -0.546 4.546 10 H 0.077 0.923 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.876 3.124 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.264 1.264 17 C 0.062 3.938 18 C 0.056 3.944 19 N -0.537 5.537 20 C 0.024 3.976 21 H 0.040 0.960 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 5.183 7.777 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.022 4.022 3 H 0.092 0.908 4 C -0.015 4.015 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.254 5.254 8 C 0.025 3.975 9 C -0.584 4.584 10 H 0.095 0.905 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.703 3.297 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.067 4.067 18 C -0.072 4.072 19 N -0.261 5.261 20 C -0.124 4.124 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.155 5.118 7.672 12.995 hybrid contribution -0.289 -0.513 -0.749 0.953 sum -9.444 4.605 6.923 12.582 Atomic orbital electron populations 1.22362 0.97594 1.02898 1.00632 1.21820 0.93021 0.97157 0.90224 0.90788 1.21415 0.98890 0.88920 0.92233 0.92083 1.21844 1.00398 0.98995 0.98652 1.62594 1.58127 1.01547 1.03108 1.20211 0.95185 0.93758 0.88354 1.21701 0.91334 1.35701 1.09703 0.90550 1.24968 0.94699 0.95650 0.97767 1.69937 1.08560 1.44725 1.30569 0.86841 0.80782 0.79878 0.82164 1.20255 1.21390 1.18900 1.21941 0.99488 0.96397 0.88857 1.22237 0.97855 0.88557 0.98582 1.62330 1.59362 1.02486 1.01897 1.22345 0.98141 0.99078 0.92858 0.94109 0.92138 0.91096 0.93515 0.91198 0.92909 0.95659 0.95351 0.92783 0.92974 0.91484 0.91435 0.94459 0.95709 0.91972 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 7.97 37.16 0.30 -2.27 16 2 C 0.09 1.42 2.52 -67.66 -0.17 1.25 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.09 1.86 1.85 -67.65 -0.13 1.73 16 5 H 0.06 1.43 6.45 -51.93 -0.33 1.10 16 6 C -0.14 -2.55 8.46 37.16 0.31 -2.23 16 7 N -0.53 -11.00 4.05 -227.92 -0.92 -11.93 16 8 C 0.15 3.62 3.68 -4.97 -0.02 3.60 16 9 C -0.55 -15.12 8.22 -34.44 -0.28 -15.40 16 10 H 0.08 2.34 6.05 -52.49 -0.32 2.02 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 13 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 17 C 0.06 1.22 5.33 -3.77 -0.02 1.20 16 18 C 0.06 0.91 5.24 -3.77 -0.02 0.89 16 19 N -0.54 -8.74 4.92 -234.73 -1.15 -9.90 16 20 C 0.02 0.31 9.28 60.07 0.56 0.87 16 21 H 0.04 0.53 6.48 -51.93 -0.34 0.19 16 22 H 0.06 0.85 6.40 -51.93 -0.33 0.51 16 23 H 0.07 1.13 5.94 -51.93 -0.31 0.82 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.43 6.40 -51.93 -0.33 1.09 16 26 H 0.05 0.87 6.40 -51.93 -0.33 0.54 16 27 H 0.03 0.62 7.15 -51.93 -0.37 0.25 16 28 H 0.03 0.68 5.81 -51.93 -0.30 0.38 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 31 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.04 0.59 6.35 -51.93 -0.33 0.26 16 34 H 0.02 0.30 6.39 -51.93 -0.33 -0.03 16 35 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 263.06 15.07 3.96 3.96 Total: -1.00 -29.48 263.06 -7.27 -36.75 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.69 Total: -0.51 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 0.43 Total: -8.42 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -1.30 Total: -48.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.48 -7.27 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.178 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds