Wall clock time and date at job start Sun Mar 29 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48735 * 2 1 4 4 C 1.53049 * 109.49022 * 239.95301 * 2 1 3 5 5 H 1.09006 * 109.49101 * 178.44417 * 4 2 1 6 6 C 1.53006 * 109.48808 * 58.38211 * 4 2 1 7 7 N 1.46958 * 109.36731 * 298.39307 * 4 2 1 8 8 C 1.46905 * 110.99858 * 176.83515 * 7 4 2 9 9 C 1.50698 * 109.47170 * 57.77089 * 8 7 4 10 10 H 1.07997 * 120.00108 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99727 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99758 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 119.99984 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47164 * 89.99906 * 13 11 9 15 15 H 1.48497 * 109.47215 * 209.99778 * 13 11 9 16 16 H 1.48501 * 109.47184 * 329.99901 * 13 11 9 17 17 C 1.46952 * 110.89533 * 300.71096 * 7 4 2 18 18 C 1.53049 * 109.36804 * 59.30924 * 17 7 4 19 19 N 1.46956 * 109.48693 * 120.04484 * 2 1 3 20 20 C 1.46901 * 110.99929 * 296.80106 * 19 2 1 21 21 H 1.08995 * 109.47504 * 300.00163 * 1 2 3 22 22 H 1.08998 * 109.47109 * 60.00392 * 1 2 3 23 23 H 1.09002 * 109.47158 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46757 * 59.99931 * 6 4 2 25 25 H 1.08997 * 109.46842 * 179.97438 * 6 4 2 26 26 H 1.09000 * 109.46825 * 299.99820 * 6 4 2 27 27 H 1.08999 * 109.46747 * 177.77738 * 8 7 4 28 28 H 1.09001 * 109.46539 * 297.77210 * 8 7 4 29 29 H 0.96998 * 119.99345 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.49446 * 299.34229 * 17 7 4 31 31 H 1.09002 * 109.50770 * 179.29132 * 17 7 4 32 32 H 1.09004 * 109.49414 * 181.63101 * 18 17 7 33 33 H 1.09006 * 109.50271 * 61.57312 * 18 17 7 34 34 H 1.08996 * 109.47312 * 59.99851 * 20 19 2 35 35 H 1.09000 * 109.47473 * 180.02562 * 20 19 2 36 36 H 1.09009 * 109.47251 * 300.00289 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2489 5 1 3.1303 -0.6983 -1.2630 6 6 1.4981 -0.0265 -2.4988 7 7 1.5817 -2.1183 -1.2263 8 6 1.9892 -2.8263 -2.4473 9 6 3.4885 -2.7662 -2.5862 10 1 4.0797 -2.2538 -1.8417 11 6 4.1056 -3.3663 -3.6633 12 7 5.4142 -3.3143 -3.7843 13 14 3.0831 -4.2532 -4.9506 14 1 2.6975 -3.2982 -6.0205 15 1 3.8793 -5.3601 -5.5387 16 1 1.8596 -4.8061 -4.3161 17 6 2.0720 -2.8119 -0.0271 18 6 1.5609 -2.0894 1.2216 19 7 2.0202 -0.6936 1.1992 20 6 1.6129 0.0143 2.4203 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8374 1.0093 -2.5141 25 1 1.8623 -0.5409 -3.3881 26 1 0.4085 -0.0517 -2.4847 27 1 1.6711 -3.8671 -2.3871 28 1 1.5248 -2.3540 -3.3131 29 1 5.8483 -3.7362 -4.5422 30 1 3.1620 -2.8115 -0.0268 31 1 1.7087 -3.8396 -0.0269 32 1 1.9472 -2.5851 2.1123 33 1 0.4712 -2.1135 1.2356 34 1 0.5250 0.0642 2.4656 35 1 1.9891 -0.5200 3.2927 36 1 2.0227 1.0243 2.4086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306218767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:53 Heat of formation + Delta-G solvation = -6.683073 kcal Electronic energy + Delta-G solvation = -15398.872732 eV Core-core repulsion = 13110.270007 eV Total energy + Delta-G solvation = -2288.602725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85193 -37.01443 -34.51965 -33.84729 -30.81098 -29.31273 -27.93149 -26.69141 -24.73875 -23.25510 -22.05206 -19.81359 -18.40319 -17.16362 -16.72410 -16.26594 -16.19554 -15.68199 -15.14501 -14.73983 -14.15002 -13.87702 -13.84002 -13.42076 -13.20363 -13.04881 -12.70700 -12.55506 -12.41386 -12.35944 -12.01468 -11.96323 -11.77579 -11.61099 -11.41199 -11.05326 -10.75731 -9.17220 -8.89989 -8.29508 -6.33876 1.34874 1.36415 1.48288 2.34276 3.05382 3.08278 3.30494 3.92046 4.12984 4.20208 4.34829 4.48131 4.54457 4.61098 4.64478 4.71157 4.73057 4.89239 4.89835 4.98700 5.04127 5.07109 5.10396 5.18017 5.26123 5.31337 5.44297 5.53131 5.57471 6.09453 6.18169 6.27704 6.42162 6.48170 6.73806 7.32357 8.87197 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045393 B = 0.009475 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.683061 B = 2954.380084 C = 3101.880935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 H 0.084 0.916 4 C 0.093 3.907 5 H 0.008 0.992 6 C -0.135 4.135 7 N -0.519 5.519 8 C 0.159 3.841 9 C -0.540 4.540 10 H 0.029 0.971 11 C 0.009 3.991 12 N -0.950 5.950 13 Si 0.948 3.052 14 H -0.266 1.266 15 H -0.286 1.286 16 H -0.245 1.245 17 C 0.061 3.939 18 C 0.066 3.934 19 N -0.563 5.563 20 C 0.027 3.973 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.103 5.638 8.309 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 H 0.102 0.898 4 C -0.016 4.016 5 H 0.026 0.974 6 C -0.193 4.193 7 N -0.242 5.242 8 C 0.032 3.968 9 C -0.579 4.579 10 H 0.047 0.953 11 C -0.189 4.189 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.169 1.169 17 C -0.068 4.068 18 C -0.061 4.061 19 N -0.287 5.287 20 C -0.121 4.121 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.971 5.589 8.231 15.566 hybrid contribution 0.672 -0.594 -0.821 1.216 sum -11.299 4.996 7.410 14.406 Atomic orbital electron populations 1.22251 0.95401 1.02532 1.02212 1.21729 0.94563 0.96861 0.88623 0.89821 1.21458 0.95989 0.88886 0.95294 0.97358 1.21796 1.01619 0.99534 0.96368 1.62654 1.57241 1.02024 1.02293 1.20071 0.92222 0.94255 0.90298 1.21857 0.93290 1.34430 1.08337 0.95252 1.25934 0.95852 0.96725 1.00380 1.70100 1.10748 1.46467 1.31772 0.85696 0.79441 0.78609 0.79113 1.19065 1.21162 1.16889 1.21991 0.96871 0.97548 0.90388 1.22118 0.98508 0.88573 0.96951 1.62282 1.60462 1.02737 1.03238 1.22395 0.99128 0.99224 0.91339 0.91797 0.91319 0.92309 0.91532 0.94137 0.90655 0.95607 0.94618 0.92659 0.97380 0.90923 0.89730 0.92944 0.94244 0.90878 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 7.97 71.98 0.57 -3.66 16 2 C 0.09 2.83 2.52 44.92 0.11 2.94 16 3 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.09 3.68 1.85 44.92 0.08 3.76 16 5 H 0.01 0.42 6.45 -2.38 -0.02 0.40 16 6 C -0.14 -4.78 8.46 71.98 0.61 -4.17 16 7 N -0.52 -21.52 4.05 -875.00 -3.54 -25.07 16 8 C 0.16 7.63 3.68 85.56 0.31 7.94 16 9 C -0.54 -31.22 8.22 25.60 0.21 -31.01 16 10 H 0.03 1.94 6.05 -2.91 -0.02 1.92 16 11 C 0.01 0.50 5.47 84.65 0.46 0.96 16 12 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 13 Si 0.95 44.40 27.47 68.60 1.88 46.28 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 16 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 17 C 0.06 2.42 5.33 86.31 0.46 2.88 16 18 C 0.07 2.05 5.24 86.31 0.45 2.50 16 19 N -0.56 -17.42 4.92 -896.54 -4.41 -21.83 16 20 C 0.03 0.60 9.28 127.69 1.19 1.78 16 21 H 0.06 1.36 6.48 -2.39 -0.02 1.35 16 22 H 0.07 1.65 6.40 -2.39 -0.02 1.63 16 23 H 0.06 1.67 5.94 -2.39 -0.01 1.65 16 24 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.04 1.64 6.40 -2.39 -0.02 1.63 16 26 H 0.07 2.31 6.40 -2.39 -0.02 2.29 16 27 H 0.03 1.24 7.15 -2.39 -0.02 1.22 16 28 H 0.04 1.68 5.81 -2.39 -0.01 1.66 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.01 0.38 6.95 -2.39 -0.02 0.36 16 31 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 32 H 0.08 2.31 8.13 -2.38 -0.02 2.30 16 33 H 0.05 1.49 6.35 -2.38 -0.02 1.47 16 34 H 0.04 0.78 6.39 -2.39 -0.02 0.77 16 35 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 36 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -66.50 263.06 -0.31 -66.82 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.99 Total: 9.93 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 4.46 Total: -16.06 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -7.65 Total: -106.97 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -66.50 -0.31 -66.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306218767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.134 kcal (2) G-P(sol) polarization free energy of solvation -66.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds