Wall clock time and date at job start Sun Mar 29 2020 21:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46670 * 2 1 4 4 N 1.30118 * 121.06267 * 89.97566 * 3 2 1 5 5 S 1.69950 * 105.76452 * 179.97438 * 4 3 2 6 6 C 1.72308 * 94.57329 * 359.97438 * 5 4 3 7 7 N 1.38312 * 127.50161 * 179.73682 * 6 5 4 8 8 C 1.46490 * 120.00484 * 0.02562 * 7 6 5 9 9 C 1.50699 * 109.47668 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99421 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00387 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00025 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99844 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47001 * 90.00085 * 13 11 9 15 15 H 1.48500 * 109.47228 * 209.99504 * 13 11 9 16 16 H 1.48495 * 109.47314 * 330.00005 * 13 11 9 17 17 N 1.31294 * 121.05790 * 269.94611 * 3 2 1 18 18 H 1.08996 * 109.47931 * 300.00277 * 1 2 3 19 19 H 1.08997 * 109.47140 * 60.00497 * 1 2 3 20 20 H 1.09004 * 109.47157 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47284 * 239.99375 * 2 1 3 22 22 H 1.08998 * 109.46430 * 119.99736 * 2 1 3 23 23 H 0.97008 * 119.99833 * 180.02562 * 7 6 5 24 24 H 1.09003 * 109.47440 * 300.00540 * 8 7 6 25 25 H 1.09013 * 109.46758 * 60.00051 * 8 7 6 26 26 H 0.97001 * 119.99957 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2555 2.0540 1.1146 5 16 2.8027 3.5993 0.6662 6 6 2.6975 3.2964 -1.0268 7 7 3.0011 4.1664 -2.0583 8 6 3.4738 5.5203 -1.7595 9 6 3.7319 6.2582 -3.0479 10 1 3.5605 5.7676 -3.9947 11 6 4.1868 7.5594 -3.0181 12 7 4.3950 8.1569 -1.8652 13 14 4.5060 8.4741 -4.6152 14 1 3.2689 9.1785 -5.0380 15 1 5.5937 9.4641 -4.4098 16 1 4.9091 7.5069 -5.6675 17 7 2.2590 2.0592 -1.1247 18 1 -0.3635 0.5138 0.8899 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8932 -0.5138 0.8900 23 1 2.9010 3.8799 -2.9797 24 1 2.7163 6.0505 -1.1822 25 1 4.3969 5.4638 -1.1824 26 1 4.7147 9.0725 -1.8442 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306240772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:31 Heat of formation + Delta-G solvation = 17.739710 kcal Electronic energy + Delta-G solvation = -11528.361160 eV Core-core repulsion = 9346.478257 eV Total energy + Delta-G solvation = -2181.882903 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.10639 -37.70312 -34.99808 -33.84444 -32.10006 -29.25722 -26.35829 -24.73887 -23.60039 -20.94426 -19.68088 -18.83217 -17.55005 -16.85389 -16.59651 -15.75399 -15.29809 -14.89792 -14.80094 -14.21771 -13.48218 -13.05137 -12.95269 -12.78348 -12.61512 -12.26139 -12.20829 -12.01957 -11.89900 -11.57956 -10.79684 -10.62179 -10.36496 -9.05854 -8.35939 -6.51212 -0.18300 0.06925 0.90645 1.44247 1.44526 1.55659 1.74673 1.95358 2.38353 3.00922 3.38591 4.16440 4.36001 4.39075 4.70677 4.75652 5.00966 5.05313 5.05862 5.10585 5.34301 5.39830 5.70142 5.76864 6.37003 6.60497 6.86081 7.21116 8.75319 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.070172 B = 0.006384 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.922308 B = 4385.021259 C = 4685.772181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C 0.301 3.699 4 N -0.534 5.534 5 S 0.150 5.850 6 C 0.343 3.657 7 N -0.637 5.637 8 C 0.260 3.740 9 C -0.562 4.562 10 H 0.079 0.921 11 C 0.017 3.983 12 N -0.920 5.920 13 Si 0.979 3.021 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.262 1.262 17 N -0.611 5.611 18 H 0.048 0.952 19 H 0.047 0.953 20 H 0.097 0.903 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.416 0.584 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 -10.895 0.772 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 C 0.011 3.989 4 N -0.369 5.369 5 S 0.283 5.717 6 C -0.037 4.037 7 N -0.272 5.272 8 C 0.139 3.861 9 C -0.600 4.600 10 H 0.097 0.903 11 C -0.185 4.185 12 N -0.557 5.557 13 Si 0.802 3.198 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.186 1.186 17 N -0.350 5.350 18 H 0.067 0.933 19 H 0.066 0.934 20 H 0.116 0.884 21 H 0.122 0.878 22 H 0.121 0.879 23 H 0.255 0.745 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.208 -10.224 2.097 11.253 hybrid contribution 0.146 0.401 -1.664 1.718 sum -4.062 -9.823 0.433 10.639 Atomic orbital electron populations 1.21664 0.92482 1.03855 1.01525 1.20372 0.97448 0.84398 1.05308 1.23892 0.92895 1.00116 0.81985 1.77464 1.32041 1.01488 1.25860 1.85098 1.67024 1.20325 0.99208 1.25477 0.91670 0.90613 0.95928 1.44732 1.64835 1.12022 1.05622 1.19189 0.93762 0.75315 0.97870 1.21418 1.47294 0.98771 0.92496 0.90268 1.25839 0.94129 0.97949 1.00537 1.70047 1.44808 1.13965 1.26921 0.85233 0.78050 0.78109 0.78363 1.19698 1.20691 1.18563 1.67469 1.30859 1.06214 1.30465 0.93328 0.93351 0.88417 0.87843 0.87910 0.74509 0.96575 0.96562 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.89 71.98 0.71 -2.02 15 2 C -0.03 -0.77 6.47 29.85 0.19 -0.58 15 3 C 0.30 10.24 6.82 139.40 0.95 11.19 15 4 N -0.53 -19.79 12.15 -60.47 -0.73 -20.53 15 5 S 0.15 5.90 23.17 -56.49 -1.31 4.59 15 6 C 0.34 13.78 8.57 178.86 1.53 15.32 15 7 N -0.64 -26.26 5.69 -352.44 -2.01 -28.27 15 8 C 0.26 12.55 5.48 85.63 0.47 13.02 15 9 C -0.56 -28.41 9.28 25.60 0.24 -28.17 15 10 H 0.08 3.75 7.60 -2.91 -0.02 3.73 15 11 C 0.02 0.87 5.46 84.66 0.46 1.33 15 12 N -0.92 -50.63 13.29 21.45 0.28 -50.34 15 13 Si 0.98 40.17 29.54 68.60 2.03 42.20 15 14 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 15 H -0.28 -11.42 7.11 99.48 0.71 -10.72 15 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 17 N -0.61 -22.98 10.61 -200.05 -2.12 -25.10 15 18 H 0.05 1.06 8.14 -2.39 -0.02 1.04 15 19 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 20 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.42 15.75 8.44 -92.70 -0.78 14.97 15 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 15 25 H 0.02 0.86 8.14 -2.38 -0.02 0.84 15 26 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 Total: -1.00 -57.67 249.07 1.11 -56.56 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.41 Total: 10.81 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 4.56 Total: 10.08 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -4.58 Total: -124.24 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.31 Total: 4.59 kcal Total: -57.67 1.11 -56.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306240772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.303 kcal (2) G-P(sol) polarization free energy of solvation -57.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds