Wall clock time and date at job start Sun Mar 29 2020 21:48:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31438 * 1
3 3 Si 1.86798 * 119.99903 * 2 1
4 4 H 1.48506 * 109.47297 * 239.99681 * 3 2 1
5 5 H 1.48503 * 109.47261 * 119.99862 * 3 2 1
6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1
7 7 C 1.38754 * 120.00144 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00458 * 180.02562 * 7 2 1
9 9 O 1.34915 * 119.99751 * 0.02562 * 7 2 1
10 10 C 1.34318 * 117.00239 * 179.97438 * 9 7 2
11 11 O 1.21205 * 119.99357 * 0.02562 * 10 9 7
12 12 C 1.50701 * 120.00138 * 179.97438 * 10 9 7
13 13 H 1.09000 * 109.29985 * 320.42311 * 12 10 9
14 14 C 1.52920 * 109.29734 * 80.00344 * 12 10 9
15 15 C 1.53350 * 108.67332 * 171.06438 * 14 12 10
16 16 C 1.53074 * 108.42149 * 292.46663 * 15 14 12
17 17 C 1.50178 * 109.89080 * 48.90202 * 16 15 14
18 18 O 1.21279 * 118.24679 * 162.43792 * 17 16 15
19 19 N 1.33357 * 123.50800 * 342.41370 * 17 16 15
20 20 H 0.96998 * 120.00511 * 179.97438 * 1 2 3
21 21 H 1.08997 * 109.60321 * 290.81791 * 14 12 10
22 22 H 1.09001 * 109.60301 * 51.30869 * 14 12 10
23 23 H 1.08995 * 109.67205 * 52.20315 * 15 14 12
24 24 H 1.08997 * 109.67253 * 172.70407 * 15 14 12
25 25 H 1.09002 * 109.39771 * 169.02788 * 16 15 14
26 26 H 1.08997 * 109.40522 * 288.77386 * 16 15 14
27 27 H 0.97001 * 117.94105 * 182.22012 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3144 0.0000 0.0000
3 14 2.2483 1.6177 0.0000
4 1 3.1022 1.6964 -1.2125
5 1 3.1021 1.6965 1.2125
6 1 1.2834 2.7465 -0.0006
7 6 2.0082 -1.2016 0.0005
8 1 3.0881 -1.2017 0.0010
9 8 1.3336 -2.3700 0.0005
10 6 2.0651 -3.4965 0.0005
11 8 3.2755 -3.4330 0.0010
12 6 1.3809 -4.8393 0.0011
13 1 0.5110 -4.8001 0.6569
14 6 0.9276 -5.1761 -1.4200
15 6 0.4387 -6.6293 -1.4479
16 6 1.6401 -7.5485 -1.2141
17 6 2.4212 -7.0752 -0.0219
18 8 3.1983 -7.8473 0.4985
19 7 2.3063 -5.8512 0.4948
20 1 -0.4851 -0.8400 -0.0004
21 1 0.1149 -4.5112 -1.7119
22 1 1.7646 -5.0586 -2.1083
23 1 -0.2998 -6.7832 -0.6612
24 1 -0.0077 -6.8477 -2.4180
25 1 1.2891 -8.5651 -1.0366
26 1 2.2818 -7.5370 -2.0951
27 1 2.8743 -5.6200 1.2464
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306263201.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:48:55
Heat of formation + Delta-G solvation = -132.552082 kcal
Electronic energy + Delta-G solvation = -14202.625105 eV
Core-core repulsion = 11539.179439 eV
Total energy + Delta-G solvation = -2663.445666 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 213.083 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-40.41990 -38.98620 -36.46210 -35.27487 -32.91464 -32.25211 -29.93441 -25.86485
-24.35425 -22.74772 -20.84873 -19.07164 -18.15798 -17.30111 -16.73999 -16.08316
-15.29847 -14.88633 -14.65645 -14.05843 -13.85833 -13.70293 -13.48589 -13.11745
-11.93119 -11.64776 -11.16646 -11.10573 -11.05150 -10.98110 -10.55411 -10.30126
-9.88225 -9.83972 -9.39580 -8.82525 -8.64062 -6.86037 -4.23981 2.70771
2.98187 3.22228 3.29747 3.41772 3.47123 3.88166 4.30649 4.58642
4.71470 4.76237 4.88669 5.08721 5.28324 5.39557 5.64569 5.71198
5.77141 5.90391 6.13178 6.32167 6.86696 7.45045 7.49025 8.27756
8.28353 8.35973 8.91351 9.56248 10.58468
Molecular weight = 213.08amu
Principal moments of inertia in cm(-1)
A = 0.062012 B = 0.007406 C = 0.006882
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 451.413687 B = 3779.968933 C = 4067.602381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.016 3.984
3 Si 1.098 2.902
4 H -0.280 1.280
5 H -0.280 1.280
6 H -0.273 1.273
7 C -0.464 4.464
8 H 0.088 0.912
9 O -0.229 6.229
10 C 0.383 3.617
11 O -0.541 6.541
12 C 0.161 3.839
13 H 0.101 0.899
14 C -0.127 4.127
15 C -0.121 4.121
16 C -0.136 4.136
17 C 0.524 3.476
18 O -0.564 6.564
19 N -0.696 5.696
20 H 0.281 0.719
21 H 0.097 0.903
22 H 0.078 0.922
23 H 0.074 0.926
24 H 0.082 0.918
25 H 0.100 0.900
26 H 0.100 0.900
27 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.337 -8.923 -3.068 9.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.510 5.510
2 C -0.190 4.190
3 Si 0.922 3.078
4 H -0.206 1.206
5 H -0.206 1.206
6 H -0.198 1.198
7 C -0.540 4.540
8 H 0.106 0.894
9 O -0.136 6.136
10 C 0.228 3.772
11 O -0.437 6.437
12 C 0.054 3.946
13 H 0.118 0.882
14 C -0.164 4.164
15 C -0.159 4.159
16 C -0.176 4.176
17 C 0.311 3.689
18 O -0.444 6.444
19 N -0.348 5.348
20 H 0.091 0.909
21 H 0.115 0.885
22 H 0.097 0.903
23 H 0.093 0.907
24 H 0.100 0.900
25 H 0.119 0.881
26 H 0.119 0.881
27 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -2.007 -7.659 -2.994 8.465
hybrid contribution 0.500 -1.481 0.281 1.588
sum -1.507 -9.140 -2.713 9.653
Atomic orbital electron populations
1.70567 1.06587 1.31567 1.42303 1.26644 0.96722 1.01160 0.94430
0.83076 0.74425 0.72922 0.77378 1.20639 1.20634 1.19784 1.22143
0.93864 0.80996 1.56984 0.89389 1.83576 1.40369 1.14038 1.75657
1.23041 0.86913 0.86784 0.80434 1.90602 1.15358 1.87543 1.50185
1.20234 0.91821 0.84450 0.98120 0.88179 1.21857 1.02952 0.97487
0.94151 1.21682 0.97158 0.93605 1.03408 1.21677 0.97720 1.01173
0.96993 1.20124 0.82583 0.81143 0.85013 1.90737 1.39162 1.52974
1.61520 1.45305 1.41601 1.12159 1.35764 0.90912 0.88454 0.90330
0.90712 0.89959 0.88117 0.88142 0.75909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.11 13.69 55.48 0.76 -24.35 15
2 C 0.02 0.45 5.49 -17.53 -0.10 0.35 15
3 Si 1.10 23.83 29.92 -169.99 -5.09 18.74 15
4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15
5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15
6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15
7 C -0.46 -13.33 9.64 30.92 0.30 -13.03 15
8 H 0.09 2.61 6.86 -52.49 -0.36 2.25 15
9 O -0.23 -6.10 9.15 -20.71 -0.19 -6.29 15
10 C 0.38 8.89 7.05 36.01 0.25 9.14 15
11 O -0.54 -14.21 15.64 -19.05 -0.30 -14.51 15
12 C 0.16 2.69 3.57 -69.53 -0.25 2.44 15
13 H 0.10 1.49 8.14 -51.93 -0.42 1.07 15
14 C -0.13 -1.72 5.29 -26.59 -0.14 -1.86 15
15 C -0.12 -1.22 6.03 -26.51 -0.16 -1.38 15
16 C -0.14 -1.55 6.03 -28.10 -0.17 -1.72 15
17 C 0.52 8.42 7.71 -11.87 -0.09 8.33 15
18 O -0.56 -11.03 17.78 5.56 0.10 -10.94 15
19 N -0.70 -11.64 4.79 -55.99 -0.27 -11.91 15
20 H 0.28 8.03 7.97 -40.82 -0.33 7.70 15
21 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15
22 H 0.08 1.15 8.10 -51.93 -0.42 0.73 15
23 H 0.07 0.69 8.13 -51.93 -0.42 0.27 15
24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 15
25 H 0.10 0.98 8.14 -51.93 -0.42 0.55 15
26 H 0.10 1.06 8.14 -51.93 -0.42 0.63 15
27 H 0.40 7.16 8.46 -40.82 -0.35 6.81 15
LS Contribution 243.34 15.07 3.67 3.67
Total: -1.00 -33.97 243.34 -4.45 -38.42
By element:
Atomic # 1 Polarization: 7.67 SS G_CDS: -2.78 Total: 4.89 kcal
Atomic # 6 Polarization: 2.63 SS G_CDS: -0.35 Total: 2.28 kcal
Atomic # 7 Polarization: -36.75 SS G_CDS: 0.49 Total: -36.26 kcal
Atomic # 8 Polarization: -31.35 SS G_CDS: -0.39 Total: -31.74 kcal
Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.74 kcal
Total LS contribution 3.67 Total: 3.67 kcal
Total: -33.97 -4.45 -38.42 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306263201.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -94.133 kcal
(2) G-P(sol) polarization free energy of solvation -33.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds