Wall clock time and date at job start Sun Mar 29 2020 21:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86798 * 119.99903 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99681 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99862 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38754 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00458 * 180.02562 * 7 2 1 9 9 O 1.34915 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.34318 * 117.00239 * 179.97438 * 9 7 2 11 11 O 1.21205 * 119.99357 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00138 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.29985 * 320.42311 * 12 10 9 14 14 C 1.52920 * 109.29734 * 80.00344 * 12 10 9 15 15 C 1.53350 * 108.67332 * 171.06438 * 14 12 10 16 16 C 1.53074 * 108.42149 * 292.46663 * 15 14 12 17 17 C 1.50178 * 109.89080 * 48.90202 * 16 15 14 18 18 O 1.21279 * 118.24679 * 162.43792 * 17 16 15 19 19 N 1.33357 * 123.50800 * 342.41370 * 17 16 15 20 20 H 0.96998 * 120.00511 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.60321 * 290.81791 * 14 12 10 22 22 H 1.09001 * 109.60301 * 51.30869 * 14 12 10 23 23 H 1.08995 * 109.67205 * 52.20315 * 15 14 12 24 24 H 1.08997 * 109.67253 * 172.70407 * 15 14 12 25 25 H 1.09002 * 109.39771 * 169.02788 * 16 15 14 26 26 H 1.08997 * 109.40522 * 288.77386 * 16 15 14 27 27 H 0.97001 * 117.94105 * 182.22012 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 3.1021 1.6965 1.2125 6 1 1.2834 2.7465 -0.0006 7 6 2.0082 -1.2016 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3336 -2.3700 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4330 0.0010 12 6 1.3809 -4.8393 0.0011 13 1 0.5110 -4.8001 0.6569 14 6 0.9276 -5.1761 -1.4200 15 6 0.4387 -6.6293 -1.4479 16 6 1.6401 -7.5485 -1.2141 17 6 2.4212 -7.0752 -0.0219 18 8 3.1983 -7.8473 0.4985 19 7 2.3063 -5.8512 0.4948 20 1 -0.4851 -0.8400 -0.0004 21 1 0.1149 -4.5112 -1.7119 22 1 1.7646 -5.0586 -2.1083 23 1 -0.2998 -6.7832 -0.6612 24 1 -0.0077 -6.8477 -2.4180 25 1 1.2891 -8.5651 -1.0366 26 1 2.2818 -7.5370 -2.0951 27 1 2.8743 -5.6200 1.2464 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306263201.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:55 Heat of formation + Delta-G solvation = -132.552082 kcal Electronic energy + Delta-G solvation = -14202.625105 eV Core-core repulsion = 11539.179439 eV Total energy + Delta-G solvation = -2663.445666 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41990 -38.98620 -36.46210 -35.27487 -32.91464 -32.25211 -29.93441 -25.86485 -24.35425 -22.74772 -20.84873 -19.07164 -18.15798 -17.30111 -16.73999 -16.08316 -15.29847 -14.88633 -14.65645 -14.05843 -13.85833 -13.70293 -13.48589 -13.11745 -11.93119 -11.64776 -11.16646 -11.10573 -11.05150 -10.98110 -10.55411 -10.30126 -9.88225 -9.83972 -9.39580 -8.82525 -8.64062 -6.86037 -4.23981 2.70771 2.98187 3.22228 3.29747 3.41772 3.47123 3.88166 4.30649 4.58642 4.71470 4.76237 4.88669 5.08721 5.28324 5.39557 5.64569 5.71198 5.77141 5.90391 6.13178 6.32167 6.86696 7.45045 7.49025 8.27756 8.28353 8.35973 8.91351 9.56248 10.58468 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.062012 B = 0.007406 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.413687 B = 3779.968933 C = 4067.602381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.016 3.984 3 Si 1.098 2.902 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.464 4.464 8 H 0.088 0.912 9 O -0.229 6.229 10 C 0.383 3.617 11 O -0.541 6.541 12 C 0.161 3.839 13 H 0.101 0.899 14 C -0.127 4.127 15 C -0.121 4.121 16 C -0.136 4.136 17 C 0.524 3.476 18 O -0.564 6.564 19 N -0.696 5.696 20 H 0.281 0.719 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -8.923 -3.068 9.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.190 4.190 3 Si 0.922 3.078 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.106 0.894 9 O -0.136 6.136 10 C 0.228 3.772 11 O -0.437 6.437 12 C 0.054 3.946 13 H 0.118 0.882 14 C -0.164 4.164 15 C -0.159 4.159 16 C -0.176 4.176 17 C 0.311 3.689 18 O -0.444 6.444 19 N -0.348 5.348 20 H 0.091 0.909 21 H 0.115 0.885 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.007 -7.659 -2.994 8.465 hybrid contribution 0.500 -1.481 0.281 1.588 sum -1.507 -9.140 -2.713 9.653 Atomic orbital electron populations 1.70567 1.06587 1.31567 1.42303 1.26644 0.96722 1.01160 0.94430 0.83076 0.74425 0.72922 0.77378 1.20639 1.20634 1.19784 1.22143 0.93864 0.80996 1.56984 0.89389 1.83576 1.40369 1.14038 1.75657 1.23041 0.86913 0.86784 0.80434 1.90602 1.15358 1.87543 1.50185 1.20234 0.91821 0.84450 0.98120 0.88179 1.21857 1.02952 0.97487 0.94151 1.21682 0.97158 0.93605 1.03408 1.21677 0.97720 1.01173 0.96993 1.20124 0.82583 0.81143 0.85013 1.90737 1.39162 1.52974 1.61520 1.45305 1.41601 1.12159 1.35764 0.90912 0.88454 0.90330 0.90712 0.89959 0.88117 0.88142 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 13.69 55.48 0.76 -24.35 15 2 C 0.02 0.45 5.49 -17.53 -0.10 0.35 15 3 Si 1.10 23.83 29.92 -169.99 -5.09 18.74 15 4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 7 C -0.46 -13.33 9.64 30.92 0.30 -13.03 15 8 H 0.09 2.61 6.86 -52.49 -0.36 2.25 15 9 O -0.23 -6.10 9.15 -20.71 -0.19 -6.29 15 10 C 0.38 8.89 7.05 36.01 0.25 9.14 15 11 O -0.54 -14.21 15.64 -19.05 -0.30 -14.51 15 12 C 0.16 2.69 3.57 -69.53 -0.25 2.44 15 13 H 0.10 1.49 8.14 -51.93 -0.42 1.07 15 14 C -0.13 -1.72 5.29 -26.59 -0.14 -1.86 15 15 C -0.12 -1.22 6.03 -26.51 -0.16 -1.38 15 16 C -0.14 -1.55 6.03 -28.10 -0.17 -1.72 15 17 C 0.52 8.42 7.71 -11.87 -0.09 8.33 15 18 O -0.56 -11.03 17.78 5.56 0.10 -10.94 15 19 N -0.70 -11.64 4.79 -55.99 -0.27 -11.91 15 20 H 0.28 8.03 7.97 -40.82 -0.33 7.70 15 21 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.08 1.15 8.10 -51.93 -0.42 0.73 15 23 H 0.07 0.69 8.13 -51.93 -0.42 0.27 15 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.10 0.98 8.14 -51.93 -0.42 0.55 15 26 H 0.10 1.06 8.14 -51.93 -0.42 0.63 15 27 H 0.40 7.16 8.46 -40.82 -0.35 6.81 15 LS Contribution 243.34 15.07 3.67 3.67 Total: -1.00 -33.97 243.34 -4.45 -38.42 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -2.78 Total: 4.89 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.35 Total: 2.28 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.49 Total: -36.26 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.39 Total: -31.74 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.74 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.97 -4.45 -38.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306263201.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.133 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds