Wall clock time and date at job start Sun Mar 29 2020 22:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 110.45539 * 2 1 4 4 N 1.46497 * 109.46749 * 59.30389 * 3 2 1 5 5 C 1.34782 * 119.99996 * 180.27335 * 4 3 2 6 6 O 1.21691 * 119.99738 * 359.72297 * 5 4 3 7 7 C 1.46376 * 120.00224 * 179.71910 * 5 4 3 8 8 H 1.07996 * 119.99775 * 353.94594 * 7 5 4 9 9 C 1.40043 * 119.99548 * 173.93727 * 7 5 4 10 10 N 1.30671 * 120.00583 * 6.15506 * 9 7 5 11 11 Si 1.86808 * 119.99577 * 186.15047 * 9 7 5 12 12 H 1.48503 * 109.46542 * 94.98983 * 11 9 7 13 13 H 1.48499 * 109.47029 * 214.98532 * 11 9 7 14 14 H 1.48497 * 109.47152 * 334.99223 * 11 9 7 15 15 C 1.54517 * 110.50953 * 237.39993 * 2 1 3 16 16 C 1.54485 * 104.05756 * 241.21616 * 15 2 1 17 17 O 1.44420 * 104.80491 * 23.98024 * 16 15 2 18 18 C 1.44642 * 105.37143 * 319.56244 * 17 16 15 19 19 H 1.09000 * 109.47581 * 60.70140 * 1 2 3 20 20 H 1.09006 * 109.47076 * 180.69557 * 1 2 3 21 21 H 1.08996 * 109.47421 * 300.69683 * 1 2 3 22 22 H 1.08996 * 109.47258 * 299.30167 * 3 2 1 23 23 H 1.09006 * 109.46595 * 179.29856 * 3 2 1 24 24 H 0.96999 * 120.00551 * 359.97438 * 4 3 2 25 25 H 0.97002 * 120.00208 * 179.97438 * 10 9 7 26 26 H 1.08990 * 110.51096 * 359.85779 * 15 2 1 27 27 H 1.08992 * 110.51028 * 122.43892 * 15 2 1 28 28 H 1.09002 * 110.36874 * 142.81452 * 16 15 2 29 29 H 1.09000 * 110.37270 * 265.03506 * 16 15 2 30 30 H 1.09001 * 110.34398 * 281.59586 * 18 17 16 31 31 H 1.08992 * 110.50942 * 159.18616 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0646 1.4335 0.0000 4 7 1.5746 2.1374 1.1877 5 6 1.9154 3.4246 1.3967 6 8 2.6342 4.0005 0.6014 7 6 1.4208 4.1297 2.5802 8 1 0.7059 3.6522 3.2338 9 6 1.8748 5.4236 2.8650 10 7 2.6452 6.0478 2.0139 11 14 1.3789 6.2571 4.4615 12 1 2.4374 6.0433 5.4810 13 1 1.2049 7.7130 4.2265 14 1 0.1005 5.6775 4.9462 15 6 2.0713 -0.7797 -1.2192 16 6 2.8786 -1.9394 -0.5947 17 8 2.3118 -2.1166 0.7218 18 6 2.0712 -0.7797 1.2188 19 1 -0.3634 0.5029 -0.8962 20 1 -0.3633 -1.0276 0.0125 21 1 -0.3634 0.5246 0.8836 22 1 1.7204 1.9497 -0.8961 23 1 3.1545 1.4147 0.0126 24 1 1.0014 1.6785 1.8215 25 1 2.9594 6.9441 2.2110 26 1 1.2490 -1.1673 -1.8205 27 1 2.7180 -0.1433 -1.8231 28 1 2.7574 -2.8473 -1.1855 29 1 3.9329 -1.6722 -0.5229 30 1 3.0010 -0.3338 1.5720 31 1 1.3302 -0.7970 2.0178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306269938.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:31 Heat of formation + Delta-G solvation = -98.058142 kcal Electronic energy + Delta-G solvation = -14456.500182 eV Core-core repulsion = 11930.383379 eV Total energy + Delta-G solvation = -2526.116802 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.74836 -37.17165 -34.64235 -32.54014 -31.55200 -29.55338 -27.04358 -26.21724 -24.58956 -22.53616 -19.75543 -19.12343 -17.30445 -16.05139 -15.64832 -15.23225 -15.04512 -14.21197 -13.99186 -13.85061 -13.34511 -12.82166 -12.30556 -12.17492 -12.14040 -11.35140 -11.29621 -11.22374 -10.94992 -10.73294 -10.50914 -10.47417 -10.32480 -10.18168 -9.60558 -8.84937 -7.61852 -7.50521 -6.19613 -4.63765 3.13909 3.21111 3.24604 4.05261 4.10939 4.53340 4.58757 4.81655 4.91931 5.10231 5.24018 5.32060 5.43029 5.69476 5.75882 5.77761 5.86215 5.92917 5.96830 6.10838 6.14518 6.33322 6.50812 6.53532 6.87547 7.43605 7.92229 8.09009 8.33021 9.02647 9.53017 10.59790 10.78368 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056821 B = 0.006845 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.657704 B = 4089.306667 C = 4239.833586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C 0.148 3.852 4 N -0.766 5.766 5 C 0.555 3.445 6 O -0.582 6.582 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.907 3.093 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.145 4.145 16 C 0.046 3.954 17 O -0.381 6.381 18 C 0.055 3.945 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.379 0.621 25 H 0.268 0.732 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -12.013 -2.488 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C 0.023 3.977 4 N -0.423 5.423 5 C 0.358 3.642 6 O -0.465 6.465 7 C -0.584 4.584 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.183 4.183 16 C -0.031 4.031 17 O -0.300 6.300 18 C -0.021 4.021 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.211 0.789 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.008 -11.610 -3.032 12.166 hybrid contribution -0.438 0.438 0.928 1.116 sum -2.446 -11.172 -2.104 11.628 Atomic orbital electron populations 1.21799 0.93280 1.01319 1.02619 1.22199 0.97084 0.96227 0.95101 1.20906 0.97687 0.88375 0.90752 1.46163 1.56702 1.14272 1.25131 1.18223 0.80491 0.78777 0.86671 1.90598 1.41139 1.66517 1.48266 1.20887 1.27937 1.00126 1.09438 0.91425 1.25702 0.93511 0.96891 0.97070 1.70028 1.25477 1.11265 1.32955 0.86371 0.79577 0.78595 0.82279 1.19805 1.20462 1.18887 1.23006 1.00431 0.97113 0.97731 1.23371 0.96974 0.98505 0.84273 1.89097 1.83155 1.26741 1.30974 1.23601 1.00619 0.81828 0.96094 0.92364 0.92626 0.91913 0.93103 0.93290 0.78894 0.92130 0.90560 0.90134 0.89496 0.92377 0.91609 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.11 37.15 0.30 -1.47 16 2 C -0.11 -1.52 0.75 -152.94 -0.11 -1.63 16 3 C 0.15 2.81 4.31 -4.04 -0.02 2.79 16 4 N -0.77 -16.89 5.08 -61.72 -0.31 -17.20 16 5 C 0.55 15.78 7.74 -12.98 -0.10 15.68 16 6 O -0.58 -18.97 15.05 5.20 0.08 -18.89 16 7 C -0.55 -15.46 9.53 -35.63 -0.34 -15.80 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 10 N -0.77 -23.18 11.85 55.55 0.66 -22.52 16 11 Si 0.91 20.16 29.56 -169.99 -5.03 15.14 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 15 C -0.14 -1.76 6.38 -25.16 -0.16 -1.92 16 16 C 0.05 0.54 7.64 37.94 0.29 0.83 16 17 O -0.38 -5.54 11.65 -35.23 -0.41 -5.95 16 18 C 0.06 0.80 6.27 37.94 0.24 1.03 16 19 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.06 0.86 6.88 -51.93 -0.36 0.50 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 24 H 0.38 7.35 7.04 -40.82 -0.29 7.06 16 25 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 26 H 0.08 0.83 7.73 -51.93 -0.40 0.42 16 27 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 31 H 0.09 1.24 7.87 -51.93 -0.41 0.83 16 LS Contribution 260.82 15.07 3.93 3.93 Total: -1.00 -33.95 260.82 -5.43 -39.37 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.35 Total: 4.24 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 0.00 Total: 1.88 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.34 Total: -39.72 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.33 Total: -24.84 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.95 -5.43 -39.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269938.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.685 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds