Wall clock time and date at job start Sun Mar 29 2020 22:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 110.45539 * 2 1 4 4 N 1.46497 * 109.46749 * 59.30389 * 3 2 1 5 5 C 1.34782 * 119.99996 * 180.27335 * 4 3 2 6 6 O 1.21691 * 119.99738 * 359.72297 * 5 4 3 7 7 C 1.46376 * 120.00224 * 179.71910 * 5 4 3 8 8 H 1.07996 * 119.99775 * 353.94594 * 7 5 4 9 9 C 1.40043 * 119.99548 * 173.93727 * 7 5 4 10 10 N 1.30671 * 120.00583 * 6.15506 * 9 7 5 11 11 Si 1.86808 * 119.99577 * 186.15047 * 9 7 5 12 12 H 1.48503 * 109.46542 * 94.98983 * 11 9 7 13 13 H 1.48499 * 109.47029 * 214.98532 * 11 9 7 14 14 H 1.48497 * 109.47152 * 334.99223 * 11 9 7 15 15 C 1.54517 * 110.50953 * 237.39993 * 2 1 3 16 16 C 1.54485 * 104.05756 * 241.21616 * 15 2 1 17 17 O 1.44420 * 104.80491 * 23.98024 * 16 15 2 18 18 C 1.44642 * 105.37143 * 319.56244 * 17 16 15 19 19 H 1.09000 * 109.47581 * 60.70140 * 1 2 3 20 20 H 1.09006 * 109.47076 * 180.69557 * 1 2 3 21 21 H 1.08996 * 109.47421 * 300.69683 * 1 2 3 22 22 H 1.08996 * 109.47258 * 299.30167 * 3 2 1 23 23 H 1.09006 * 109.46595 * 179.29856 * 3 2 1 24 24 H 0.96999 * 120.00551 * 359.97438 * 4 3 2 25 25 H 0.97002 * 120.00208 * 179.97438 * 10 9 7 26 26 H 1.08990 * 110.51096 * 359.85779 * 15 2 1 27 27 H 1.08992 * 110.51028 * 122.43892 * 15 2 1 28 28 H 1.09002 * 110.36874 * 142.81452 * 16 15 2 29 29 H 1.09000 * 110.37270 * 265.03506 * 16 15 2 30 30 H 1.09001 * 110.34398 * 281.59586 * 18 17 16 31 31 H 1.08992 * 110.50942 * 159.18616 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0646 1.4335 0.0000 4 7 1.5746 2.1374 1.1877 5 6 1.9154 3.4246 1.3967 6 8 2.6342 4.0005 0.6014 7 6 1.4208 4.1297 2.5802 8 1 0.7059 3.6522 3.2338 9 6 1.8748 5.4236 2.8650 10 7 2.6452 6.0478 2.0139 11 14 1.3789 6.2571 4.4615 12 1 2.4374 6.0433 5.4810 13 1 1.2049 7.7130 4.2265 14 1 0.1005 5.6775 4.9462 15 6 2.0713 -0.7797 -1.2192 16 6 2.8786 -1.9394 -0.5947 17 8 2.3118 -2.1166 0.7218 18 6 2.0712 -0.7797 1.2188 19 1 -0.3634 0.5029 -0.8962 20 1 -0.3633 -1.0276 0.0125 21 1 -0.3634 0.5246 0.8836 22 1 1.7204 1.9497 -0.8961 23 1 3.1545 1.4147 0.0126 24 1 1.0014 1.6785 1.8215 25 1 2.9594 6.9441 2.2110 26 1 1.2490 -1.1673 -1.8205 27 1 2.7180 -0.1433 -1.8231 28 1 2.7574 -2.8473 -1.1855 29 1 3.9329 -1.6722 -0.5229 30 1 3.0010 -0.3338 1.5720 31 1 1.3302 -0.7970 2.0178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306269938.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:31 Heat of formation + Delta-G solvation = -123.805770 kcal Electronic energy + Delta-G solvation = -14457.616683 eV Core-core repulsion = 11930.383379 eV Total energy + Delta-G solvation = -2527.233303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.95309 -39.16420 -36.19055 -34.63187 -33.28044 -30.64699 -28.91435 -27.53643 -26.23545 -23.61788 -21.70462 -20.48709 -19.19710 -17.50735 -17.19678 -16.78450 -16.22883 -15.90360 -15.72620 -15.38093 -14.70224 -14.29276 -13.92676 -13.77729 -13.36381 -13.07129 -12.87652 -12.60800 -12.59628 -12.33278 -12.03960 -11.83533 -11.68087 -11.59036 -10.93752 -10.70079 -9.88197 -9.49035 -8.30669 -6.85715 1.40536 1.41556 1.57670 2.24651 2.46710 2.96194 3.10273 3.56509 3.62762 3.75821 3.83303 4.15269 4.24115 4.31587 4.62157 4.69766 4.76146 4.77194 4.84701 4.92658 5.00766 5.08830 5.17471 5.32106 5.33001 5.80124 5.87068 6.22106 6.26478 6.86546 7.53667 8.48309 8.66651 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056821 B = 0.006845 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.657704 B = 4089.306667 C = 4239.833586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C 0.152 3.848 4 N -0.751 5.751 5 C 0.537 3.463 6 O -0.635 6.635 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.028 3.972 10 N -0.823 5.823 11 Si 0.998 3.002 12 H -0.264 1.264 13 H -0.273 1.273 14 H -0.247 1.247 15 C -0.141 4.141 16 C 0.042 3.958 17 O -0.391 6.391 18 C 0.057 3.943 19 H 0.058 0.942 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.394 0.606 25 H 0.275 0.725 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 -13.179 -1.455 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.099 4.099 3 C 0.027 3.973 4 N -0.406 5.406 5 C 0.341 3.659 6 O -0.523 6.523 7 C -0.611 4.611 8 H 0.106 0.894 9 C -0.187 4.187 10 N -0.453 5.453 11 Si 0.818 3.182 12 H -0.188 1.188 13 H -0.198 1.198 14 H -0.170 1.170 15 C -0.179 4.179 16 C -0.034 4.034 17 O -0.310 6.310 18 C -0.020 4.020 19 H 0.077 0.923 20 H 0.095 0.905 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.229 0.771 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.310 -12.845 -1.999 13.415 hybrid contribution -0.017 0.739 0.535 0.912 sum -3.326 -12.107 -1.463 12.640 Atomic orbital electron populations 1.21783 0.91953 1.02589 1.02356 1.22119 0.97999 0.93075 0.96665 1.20969 0.96687 0.90949 0.88723 1.45799 1.55906 1.12733 1.26150 1.18626 0.80170 0.80518 0.86559 1.90551 1.43463 1.68335 1.49905 1.21439 1.28694 1.01114 1.09841 0.89358 1.26986 0.92824 0.97429 1.01416 1.70193 1.27065 1.12099 1.35913 0.85001 0.79865 0.77174 0.76206 1.18833 1.19776 1.17030 1.23026 1.01164 0.96885 0.96851 1.23571 0.96819 0.99615 0.83425 1.89091 1.83362 1.26307 1.32232 1.23530 1.00102 0.82033 0.96301 0.92303 0.90504 0.92576 0.94635 0.95133 0.77134 0.91560 0.88446 0.90238 0.86696 0.92331 0.93329 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.11 71.98 0.58 -2.59 16 2 C -0.10 -2.70 0.75 -51.16 -0.04 -2.74 16 3 C 0.15 5.84 4.31 86.38 0.37 6.21 16 4 N -0.75 -33.48 5.08 -467.40 -2.37 -35.85 16 5 C 0.54 31.34 7.74 86.36 0.67 32.01 16 6 O -0.63 -43.08 15.05 -4.32 -0.07 -43.15 16 7 C -0.57 -32.61 9.53 24.83 0.24 -32.37 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.03 1.59 5.49 85.30 0.47 2.06 16 10 N -0.82 -50.80 11.85 21.83 0.26 -50.54 16 11 Si 1.00 40.94 29.56 68.60 2.03 42.97 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 13 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 14 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 15 C -0.14 -3.15 6.38 31.62 0.20 -2.95 16 16 C 0.04 0.90 7.64 72.49 0.55 1.45 16 17 O -0.39 -10.52 11.65 -148.98 -1.74 -12.26 16 18 C 0.06 1.58 6.27 72.49 0.45 2.03 16 19 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 21 H 0.06 1.44 6.88 -2.39 -0.02 1.42 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.03 1.28 8.12 -2.38 -0.02 1.26 16 24 H 0.39 15.11 7.04 -92.71 -0.65 14.45 16 25 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 26 H 0.10 1.79 7.73 -2.39 -0.02 1.78 16 27 H 0.08 1.80 7.73 -2.39 -0.02 1.78 16 28 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.50 7.85 -2.39 -0.02 1.48 16 31 H 0.10 2.58 7.87 -2.39 -0.02 2.56 16 Total: -1.00 -74.97 260.82 2.08 -72.89 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.47 Total: 22.82 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 3.50 Total: 3.12 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.12 Total: -86.39 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -1.80 Total: -55.41 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -74.97 2.08 -72.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269938.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.914 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds