Wall clock time and date at job start Sun Mar 29 2020 22:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.44004 * 2 1 4 4 N 1.46497 * 109.47266 * 300.70250 * 3 2 1 5 5 C 1.34777 * 120.00626 * 179.97438 * 4 3 2 6 6 O 1.21699 * 119.99392 * 0.02562 * 5 4 3 7 7 C 1.46367 * 120.00628 * 180.02562 * 5 4 3 8 8 H 1.08002 * 119.99564 * 0.02562 * 7 5 4 9 9 C 1.40052 * 120.00350 * 180.02562 * 7 5 4 10 10 N 1.30673 * 119.99656 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 119.99864 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47379 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46661 * 120.00300 * 11 9 7 14 14 H 1.48501 * 109.46860 * 239.99707 * 11 9 7 15 15 C 1.54816 * 110.48861 * 122.54812 * 2 1 3 16 16 C 1.55344 * 101.93236 * 97.82283 * 15 2 1 17 17 O 1.44370 * 103.50536 * 37.05310 * 16 15 2 18 18 C 1.43744 * 106.97584 * 319.90876 * 17 16 15 19 19 H 1.09002 * 109.47153 * 59.29710 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.29901 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.29882 * 1 2 3 22 22 H 1.09002 * 109.46946 * 60.69770 * 3 2 1 23 23 H 1.08999 * 109.47322 * 180.69949 * 3 2 1 24 24 H 0.97000 * 119.99834 * 359.97438 * 4 3 2 25 25 H 0.96996 * 119.99581 * 180.02562 * 10 9 7 26 26 H 1.08997 * 110.90496 * 215.99394 * 15 2 1 27 27 H 1.08999 * 110.90281 * 339.59240 * 15 2 1 28 28 H 1.09001 * 110.63607 * 278.53516 * 16 15 2 29 29 H 1.08998 * 110.58564 * 155.54589 * 16 15 2 30 30 H 1.09003 * 109.87948 * 267.08725 * 18 17 16 31 31 H 1.09002 * 110.00722 * 146.00844 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4336 0.0000 4 7 1.5740 2.1375 -1.1876 5 6 1.9185 3.4232 -1.3992 6 8 2.6372 3.9993 -0.6038 7 6 1.4282 4.1266 -2.5854 8 1 0.7900 3.6155 -3.2910 9 6 1.7866 5.4625 -2.8055 10 7 2.5583 6.0811 -1.9515 11 14 1.1614 6.3599 -4.3198 12 1 0.3120 5.4439 -5.1226 13 1 0.3610 7.5387 -3.9013 14 1 2.3148 6.8105 -5.1395 15 6 2.0719 -0.7802 1.2225 16 6 2.3781 -2.1724 0.6049 17 8 2.8754 -1.8548 -0.7127 18 6 2.0694 -0.7766 -1.2168 19 1 -0.3633 0.5247 -0.8836 20 1 -0.3633 0.5029 0.8962 21 1 -0.3634 -1.0276 -0.0126 22 1 1.7198 1.9497 0.8962 23 1 3.1540 1.4152 -0.0125 24 1 1.0015 1.6782 -1.8217 25 1 2.8062 7.0064 -2.1037 26 1 2.9797 -0.3167 1.6084 27 1 1.3140 -0.8566 2.0021 28 1 1.4698 -2.7713 0.5383 29 1 3.1392 -2.6911 1.1877 30 1 1.2391 -1.1757 -1.7996 31 1 2.6751 -0.1173 -1.8385 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306269939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:34 Heat of formation + Delta-G solvation = -97.212840 kcal Electronic energy + Delta-G solvation = -14457.746542 eV Core-core repulsion = 11931.666395 eV Total energy + Delta-G solvation = -2526.080147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.78230 -37.16279 -34.66631 -32.54247 -31.60770 -29.43300 -27.06681 -26.21705 -24.68043 -22.50055 -19.75673 -19.10488 -17.35151 -16.10891 -15.66020 -15.23321 -14.90458 -14.41587 -13.97345 -13.80737 -13.03869 -12.93167 -12.44152 -12.32853 -12.07670 -11.41596 -11.33462 -11.16010 -10.97753 -10.66968 -10.51710 -10.45963 -10.34880 -10.15419 -9.54930 -8.85178 -7.60510 -7.49030 -6.17844 -4.63231 3.13494 3.21594 3.26043 4.03722 4.10819 4.49654 4.60236 4.76518 4.95390 5.08026 5.20060 5.30257 5.38588 5.65070 5.75133 5.78039 5.83141 5.87458 5.96113 6.10352 6.22990 6.29808 6.51202 6.55262 6.95844 7.44213 7.93097 8.10121 8.33668 9.03485 9.54192 10.61134 10.79864 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058670 B = 0.006791 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.133931 B = 4121.843180 C = 4242.927774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.149 3.851 4 N -0.767 5.767 5 C 0.554 3.446 6 O -0.581 6.581 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.087 3.913 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.144 4.144 16 C 0.047 3.953 17 O -0.380 6.380 18 C 0.054 3.946 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.379 0.621 25 H 0.267 0.733 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 -12.611 2.644 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C 0.024 3.976 4 N -0.423 5.423 5 C 0.358 3.642 6 O -0.464 6.464 7 C -0.583 4.583 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.182 4.182 16 C -0.029 4.029 17 O -0.299 6.299 18 C -0.023 4.023 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.211 0.789 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.292 -12.106 3.185 12.943 hybrid contribution -0.799 0.357 -0.898 1.254 sum -4.092 -11.749 2.287 12.650 Atomic orbital electron populations 1.21832 0.93333 1.01123 1.02946 1.22210 0.96721 0.96732 0.95048 1.20876 0.97878 0.88231 0.90663 1.46178 1.56640 1.14397 1.25121 1.18227 0.80415 0.78710 0.86859 1.90603 1.40761 1.66314 1.48744 1.20919 1.32956 0.96842 1.07556 0.91436 1.25713 0.93386 0.97459 0.96680 1.70035 1.26446 1.10509 1.32743 0.86326 0.79120 0.79574 0.81783 1.18793 1.20181 1.20162 1.23258 1.02111 0.95413 0.97439 1.23565 0.98966 0.96304 0.84107 1.88850 1.56718 1.53080 1.31279 1.23371 0.95024 0.88158 0.95700 0.91701 0.92125 0.92931 0.93143 0.93079 0.78934 0.92181 0.90062 0.90123 0.92519 0.89310 0.92441 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.08 37.16 0.30 -1.41 16 2 C -0.11 -1.53 0.68 -152.98 -0.10 -1.63 16 3 C 0.15 2.87 4.33 -4.05 -0.02 2.85 16 4 N -0.77 -17.03 4.88 -61.73 -0.30 -17.33 16 5 C 0.55 15.87 7.75 -12.99 -0.10 15.77 16 6 O -0.58 -19.08 15.02 5.19 0.08 -19.01 16 7 C -0.55 -15.49 9.54 -35.63 -0.34 -15.83 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 10 N -0.77 -23.29 11.83 55.55 0.66 -22.63 16 11 Si 0.91 20.23 29.56 -169.99 -5.02 15.20 16 12 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 15 C -0.14 -1.75 6.29 -24.53 -0.15 -1.90 16 16 C 0.05 0.54 7.73 38.40 0.30 0.84 16 17 O -0.38 -5.74 11.52 -35.23 -0.41 -6.14 16 18 C 0.05 0.79 6.61 37.73 0.25 1.04 16 19 H 0.06 0.86 6.88 -51.93 -0.36 0.51 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.38 7.37 7.03 -40.82 -0.29 7.09 16 25 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 26 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 27 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.75 7.69 -51.93 -0.40 0.35 16 31 H 0.09 1.52 7.47 -51.93 -0.39 1.14 16 LS Contribution 260.43 15.07 3.92 3.92 Total: -1.00 -34.30 260.43 -5.37 -39.66 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.33 Total: 4.23 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 0.03 Total: 2.09 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.36 Total: -39.96 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.33 Total: -25.15 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.30 -5.37 -39.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.548 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds