Wall clock time and date at job start Sun Mar 29 2020 22:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.44004 * 2 1 4 4 N 1.46497 * 109.47266 * 300.70250 * 3 2 1 5 5 C 1.34777 * 120.00626 * 179.97438 * 4 3 2 6 6 O 1.21699 * 119.99392 * 0.02562 * 5 4 3 7 7 C 1.46367 * 120.00628 * 180.02562 * 5 4 3 8 8 H 1.08002 * 119.99564 * 0.02562 * 7 5 4 9 9 C 1.40052 * 120.00350 * 180.02562 * 7 5 4 10 10 N 1.30673 * 119.99656 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 119.99864 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47379 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46661 * 120.00300 * 11 9 7 14 14 H 1.48501 * 109.46860 * 239.99707 * 11 9 7 15 15 C 1.54816 * 110.48861 * 122.54812 * 2 1 3 16 16 C 1.55344 * 101.93236 * 97.82283 * 15 2 1 17 17 O 1.44370 * 103.50536 * 37.05310 * 16 15 2 18 18 C 1.43744 * 106.97584 * 319.90876 * 17 16 15 19 19 H 1.09002 * 109.47153 * 59.29710 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.29901 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.29882 * 1 2 3 22 22 H 1.09002 * 109.46946 * 60.69770 * 3 2 1 23 23 H 1.08999 * 109.47322 * 180.69949 * 3 2 1 24 24 H 0.97000 * 119.99834 * 359.97438 * 4 3 2 25 25 H 0.96996 * 119.99581 * 180.02562 * 10 9 7 26 26 H 1.08997 * 110.90496 * 215.99394 * 15 2 1 27 27 H 1.08999 * 110.90281 * 339.59240 * 15 2 1 28 28 H 1.09001 * 110.63607 * 278.53516 * 16 15 2 29 29 H 1.08998 * 110.58564 * 155.54589 * 16 15 2 30 30 H 1.09003 * 109.87948 * 267.08725 * 18 17 16 31 31 H 1.09002 * 110.00722 * 146.00844 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4336 0.0000 4 7 1.5740 2.1375 -1.1876 5 6 1.9185 3.4232 -1.3992 6 8 2.6372 3.9993 -0.6038 7 6 1.4282 4.1266 -2.5854 8 1 0.7900 3.6155 -3.2910 9 6 1.7866 5.4625 -2.8055 10 7 2.5583 6.0811 -1.9515 11 14 1.1614 6.3599 -4.3198 12 1 0.3120 5.4439 -5.1226 13 1 0.3610 7.5387 -3.9013 14 1 2.3148 6.8105 -5.1395 15 6 2.0719 -0.7802 1.2225 16 6 2.3781 -2.1724 0.6049 17 8 2.8754 -1.8548 -0.7127 18 6 2.0694 -0.7766 -1.2168 19 1 -0.3633 0.5247 -0.8836 20 1 -0.3633 0.5029 0.8962 21 1 -0.3634 -1.0276 -0.0126 22 1 1.7198 1.9497 0.8962 23 1 3.1540 1.4152 -0.0125 24 1 1.0015 1.6782 -1.8217 25 1 2.8062 7.0064 -2.1037 26 1 2.9797 -0.3167 1.6084 27 1 1.3140 -0.8566 2.0021 28 1 1.4698 -2.7713 0.5383 29 1 3.1392 -2.6911 1.1877 30 1 1.2391 -1.1757 -1.7996 31 1 2.6751 -0.1173 -1.8385 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306269939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:33 Heat of formation + Delta-G solvation = -123.489677 kcal Electronic energy + Delta-G solvation = -14458.885991 eV Core-core repulsion = 11931.666395 eV Total energy + Delta-G solvation = -2527.219596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.98122 -39.17272 -36.21422 -34.63936 -33.35115 -30.53611 -28.91461 -27.52711 -26.31475 -23.59966 -21.68649 -20.49863 -19.23063 -17.57824 -17.16055 -16.74148 -16.24072 -15.98079 -15.72143 -15.44418 -14.52692 -14.16000 -14.00326 -13.76931 -13.49005 -13.10622 -12.87445 -12.63758 -12.62645 -12.37163 -12.00263 -11.80596 -11.69131 -11.53470 -10.95699 -10.62711 -9.88860 -9.50020 -8.30329 -6.86872 1.40134 1.40461 1.58635 2.24365 2.46225 2.99507 3.06528 3.50266 3.61050 3.73369 3.87716 4.18522 4.22066 4.32921 4.66497 4.70771 4.72224 4.80580 4.86618 4.91064 5.00305 5.11787 5.16949 5.31350 5.33004 5.86006 5.91501 6.21664 6.25483 6.85816 7.53228 8.48037 8.66584 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058670 B = 0.006791 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.133931 B = 4121.843180 C = 4242.927774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 C 0.152 3.848 4 N -0.751 5.751 5 C 0.536 3.464 6 O -0.635 6.635 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.027 3.973 10 N -0.824 5.824 11 Si 1.000 3.000 12 H -0.245 1.245 13 H -0.268 1.268 14 H -0.269 1.269 15 C -0.142 4.142 16 C 0.046 3.954 17 O -0.403 6.403 18 C 0.057 3.943 19 H 0.055 0.945 20 H 0.060 0.940 21 H 0.083 0.917 22 H 0.035 0.965 23 H 0.024 0.976 24 H 0.394 0.606 25 H 0.274 0.726 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 -13.996 1.667 15.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 C 0.027 3.973 4 N -0.406 5.406 5 C 0.340 3.660 6 O -0.523 6.523 7 C -0.609 4.609 8 H 0.107 0.893 9 C -0.188 4.188 10 N -0.453 5.453 11 Si 0.819 3.181 12 H -0.168 1.168 13 H -0.193 1.193 14 H -0.194 1.194 15 C -0.180 4.180 16 C -0.029 4.029 17 O -0.323 6.323 18 C -0.020 4.020 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.102 0.898 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.229 0.771 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.117 -13.561 2.207 14.662 hybrid contribution -0.203 0.721 -0.525 0.915 sum -5.320 -12.840 1.682 14.000 Atomic orbital electron populations 1.21821 0.91376 1.03054 1.02601 1.22140 0.98094 0.93135 0.96540 1.20933 0.96421 0.91269 0.88705 1.45805 1.55825 1.12839 1.26107 1.18660 0.80074 0.80454 0.86824 1.90554 1.43138 1.68175 1.50423 1.21469 1.33544 0.97907 1.07992 0.89310 1.27017 0.92946 0.98255 1.00579 1.70203 1.28122 1.11355 1.35667 0.84943 0.78698 0.78017 0.76438 1.16834 1.19275 1.19436 1.23287 1.02252 0.95392 0.97041 1.23811 1.00687 0.95956 0.82484 1.88828 1.57507 1.52889 1.33076 1.23296 0.95107 0.88049 0.95569 0.92549 0.92056 0.89784 0.94652 0.95761 0.77105 0.91568 0.91375 0.87525 0.89977 0.87533 0.90180 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 71.98 0.58 -2.40 16 2 C -0.10 -2.71 0.68 -51.19 -0.03 -2.74 16 3 C 0.15 6.02 4.33 86.38 0.37 6.39 16 4 N -0.75 -34.04 4.88 -467.42 -2.28 -36.32 16 5 C 0.54 31.67 7.75 86.36 0.67 32.34 16 6 O -0.64 -43.73 15.02 -4.35 -0.07 -43.79 16 7 C -0.57 -32.77 9.54 24.83 0.24 -32.53 16 8 H 0.09 4.53 7.85 -2.91 -0.02 4.50 16 9 C 0.03 1.51 5.50 85.31 0.47 1.98 16 10 N -0.82 -51.26 11.83 21.84 0.26 -51.00 16 11 Si 1.00 41.18 29.56 68.60 2.03 43.21 16 12 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 13 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 14 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 15 C -0.14 -3.15 6.29 32.02 0.20 -2.95 16 16 C 0.05 0.93 7.73 72.79 0.56 1.49 16 17 O -0.40 -11.50 11.52 -148.98 -1.72 -13.21 16 18 C 0.06 1.59 6.61 72.36 0.48 2.07 16 19 H 0.06 1.37 6.88 -2.39 -0.02 1.36 16 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.39 15.30 7.03 -92.71 -0.65 14.64 16 25 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 26 H 0.07 1.70 7.87 -2.39 -0.02 1.68 16 27 H 0.11 1.84 7.86 -2.39 -0.02 1.82 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.89 7.69 -2.39 -0.02 1.87 16 31 H 0.06 2.15 7.47 -2.39 -0.02 2.14 16 Total: -1.00 -77.23 260.43 2.23 -75.00 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.47 Total: 22.47 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 3.54 Total: 3.65 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -2.02 Total: -87.32 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -1.78 Total: -57.00 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -77.23 2.23 -75.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.494 kcal (2) G-P(sol) polarization free energy of solvation -77.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds