Wall clock time and date at job start Sun Mar 29 2020 21:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29320 * 126.06644 * 2 1 4 4 N 1.26096 * 117.96695 * 179.97438 * 3 2 1 5 5 C 1.30242 * 117.62817 * 0.02562 * 4 3 2 6 6 N 1.38701 * 126.17059 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99901 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47184 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47418 * 89.99710 * 13 11 9 15 15 H 1.48498 * 109.47091 * 209.99770 * 13 11 9 16 16 H 1.48508 * 109.47394 * 329.99535 * 13 11 9 17 17 S 1.76487 * 126.06674 * 180.25756 * 2 1 3 18 18 H 1.08996 * 109.47329 * 90.02361 * 1 2 3 19 19 H 1.09001 * 109.47305 * 210.02367 * 1 2 3 20 20 H 1.09002 * 109.47316 * 330.02387 * 1 2 3 21 21 H 0.96998 * 119.99907 * 180.02562 * 6 5 4 22 22 H 1.09001 * 109.47464 * 60.00528 * 7 6 5 23 23 H 1.09001 * 109.47459 * 300.00243 * 7 6 5 24 24 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 25 25 H 1.08993 * 109.46955 * 60.00138 * 8 7 6 26 26 H 0.96996 * 120.00505 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5166 0.8677 0.0005 5 6 3.9520 -0.3598 0.0005 6 7 5.2809 -0.7570 0.0005 7 6 6.3460 0.2488 0.0011 8 6 7.7073 -0.4499 0.0003 9 6 8.8030 0.5847 0.0015 10 1 8.5534 1.6355 0.0023 11 6 10.1240 0.1898 0.0006 12 7 10.4278 -1.0897 -0.0009 13 14 11.4821 1.4723 0.0014 14 1 11.8426 1.8107 1.4017 15 1 12.6742 0.9313 -0.6997 16 1 11.0094 2.6945 -0.6973 17 16 2.5460 -1.4266 -0.0064 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3634 -0.8898 0.5142 20 1 -0.3634 0.8902 0.5135 21 1 5.5050 -1.7008 0.0001 22 1 6.2574 0.8714 0.8913 23 1 6.2576 0.8723 -0.8886 24 1 7.7960 -1.0736 0.8898 25 1 7.7957 -1.0722 -0.8902 26 1 11.3571 -1.3676 -0.0020 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306272182.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:29 Heat of formation + Delta-G solvation = 28.330738 kcal Electronic energy + Delta-G solvation = -11365.407883 eV Core-core repulsion = 9183.984241 eV Total energy + Delta-G solvation = -2181.423642 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.81938 -37.91173 -35.23894 -33.40676 -31.69938 -28.78108 -26.92994 -25.13596 -23.24796 -20.81796 -19.91102 -18.65983 -17.85406 -16.91517 -16.53486 -16.01235 -15.65200 -14.92819 -14.33782 -14.06404 -13.97068 -13.32559 -13.29192 -13.07505 -12.56235 -12.52437 -11.67929 -11.55082 -11.49107 -11.33991 -10.92255 -10.60658 -10.47088 -9.04645 -8.26749 -6.37337 -0.31447 -0.23021 0.34714 1.41456 1.41640 1.53240 1.76370 2.11075 2.41447 3.08589 3.49223 3.89634 4.33406 4.39343 4.42969 4.75658 4.78808 4.88073 5.18039 5.30382 5.52277 5.59768 5.79862 6.07442 6.27770 6.76279 7.32214 7.84483 8.85247 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.089550 B = 0.005355 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.601107 B = 5227.979652 C = 5514.830955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.001 4.001 3 N -0.265 5.265 4 N -0.389 5.389 5 C 0.292 3.708 6 N -0.670 5.670 7 C 0.155 3.845 8 C 0.022 3.978 9 C -0.546 4.546 10 H 0.061 0.939 11 C 0.007 3.993 12 N -0.927 5.927 13 Si 0.966 3.034 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.266 1.266 17 S 0.055 5.945 18 H 0.103 0.897 19 H 0.105 0.895 20 H 0.098 0.902 21 H 0.424 0.576 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.316 -2.521 -0.009 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.287 4.287 3 N -0.099 5.099 4 N -0.237 5.237 5 C -0.082 4.082 6 N -0.309 5.309 7 C 0.030 3.970 8 C -0.015 4.015 9 C -0.584 4.584 10 H 0.080 0.920 11 C -0.192 4.192 12 N -0.566 5.566 13 Si 0.790 3.210 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.190 1.190 17 S 0.292 5.708 18 H 0.121 0.879 19 H 0.124 0.876 20 H 0.116 0.884 21 H 0.263 0.737 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.948 -2.189 -0.019 17.089 hybrid contribution 1.284 0.034 0.006 1.284 sum -15.664 -2.155 -0.013 15.812 Atomic orbital electron populations 1.20520 0.80746 1.05681 1.05416 1.30091 1.03853 0.87534 1.07265 1.70620 0.96621 1.28347 1.14289 1.71300 1.06383 1.16689 1.29322 1.27052 0.92347 0.91852 0.96915 1.44301 0.99088 1.10555 1.76935 1.21405 0.85259 0.89935 1.00429 1.19144 0.90022 0.95867 0.96506 1.21431 0.91702 0.93640 1.51650 0.92039 1.25871 1.01416 0.97512 0.94359 1.70052 1.19339 1.16308 1.50928 0.85433 0.78048 0.78975 0.78536 1.19761 1.20543 1.18983 1.85442 0.98403 1.11190 1.75794 0.87857 0.87648 0.88366 0.73707 0.92915 0.92948 0.97211 0.97201 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.51 71.23 0.75 -0.10 15 2 C 0.00 -0.02 7.79 88.48 0.69 0.67 15 3 N -0.27 -9.04 11.55 -47.71 -0.55 -9.59 15 4 N -0.39 -15.05 11.24 -55.84 -0.63 -15.68 15 5 C 0.29 9.99 8.51 179.13 1.52 11.51 15 6 N -0.67 -23.65 5.72 -345.74 -1.98 -25.63 15 7 C 0.15 6.55 5.95 86.38 0.51 7.06 15 8 C 0.02 1.11 5.09 29.85 0.15 1.26 15 9 C -0.55 -30.20 9.11 25.60 0.23 -29.97 15 10 H 0.06 3.32 7.74 -2.91 -0.02 3.29 15 11 C 0.01 0.41 5.46 84.65 0.46 0.87 15 12 N -0.93 -54.14 13.29 21.45 0.28 -53.85 15 13 Si 0.97 43.44 29.54 68.60 2.03 45.47 15 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 15 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 17 S 0.05 1.35 23.54 -56.49 -1.33 0.02 15 18 H 0.10 1.06 8.14 -2.39 -0.02 1.04 15 19 H 0.10 0.90 8.14 -2.39 -0.02 0.88 15 20 H 0.10 1.22 8.14 -2.39 -0.02 1.20 15 21 H 0.42 13.10 8.60 -92.71 -0.80 12.30 15 22 H 0.05 2.31 8.14 -2.39 -0.02 2.29 15 23 H 0.05 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 15 25 H 0.01 0.50 8.14 -2.39 -0.02 0.49 15 26 H 0.27 14.61 8.31 -92.71 -0.77 13.84 15 Total: -1.00 -66.00 250.24 2.54 -63.46 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 0.39 Total: 4.49 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 4.32 Total: -8.69 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -2.87 Total: -104.75 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.33 Total: 0.02 kcal Total: -66.00 2.54 -63.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306272182.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.787 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds