Wall clock time and date at job start Sun Mar 29 2020 22:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.57091 * 2 1 4 4 O 1.21291 * 119.99912 * 120.15786 * 3 2 1 5 5 N 1.34771 * 119.99932 * 300.15517 * 3 2 1 6 6 C 1.37097 * 120.00252 * 180.02562 * 5 3 2 7 7 H 1.08006 * 119.99806 * 359.97438 * 6 5 3 8 8 C 1.38943 * 120.00522 * 180.02562 * 6 5 3 9 9 N 1.31416 * 119.99824 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00344 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47015 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47420 * 119.99952 * 10 8 6 13 13 H 1.48496 * 109.47190 * 240.00126 * 10 8 6 14 14 C 1.53177 * 109.52123 * 120.15555 * 2 1 3 15 15 C 1.53179 * 109.10692 * 176.84380 * 14 2 1 16 16 C 1.53100 * 109.15719 * 303.14927 * 15 14 2 17 17 O 1.42905 * 109.48516 * 57.47822 * 16 15 14 18 18 C 1.42902 * 114.09897 * 298.88856 * 17 16 15 19 19 H 1.08993 * 109.47432 * 299.84196 * 1 2 3 20 20 H 1.09006 * 109.46991 * 59.84666 * 1 2 3 21 21 H 1.09000 * 109.47049 * 179.84182 * 1 2 3 22 22 H 0.96997 * 119.99955 * 0.02562 * 5 3 2 23 23 H 0.97004 * 119.99639 * 180.02562 * 9 8 6 24 24 H 1.09002 * 109.54459 * 296.75600 * 14 2 1 25 25 H 1.08999 * 109.54390 * 56.93522 * 14 2 1 26 26 H 1.08997 * 109.52685 * 62.97182 * 15 14 2 27 27 H 1.08999 * 109.52226 * 183.15941 * 15 14 2 28 28 H 1.09002 * 109.41285 * 297.49784 * 16 15 14 29 29 H 1.09000 * 109.48554 * 177.50179 * 16 15 14 30 30 H 1.09006 * 109.47676 * 301.17676 * 18 17 16 31 31 H 1.08996 * 109.47921 * 181.14393 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4200 0.0000 4 8 2.7352 1.8146 0.9082 5 7 1.7081 2.2513 -1.0092 6 6 2.1677 3.5429 -1.0095 7 1 2.7913 3.8944 -0.2008 8 6 1.8305 4.4002 -2.0497 9 7 1.0713 3.9727 -3.0335 10 14 2.4562 6.1603 -2.0497 11 1 3.2858 6.3907 -0.8397 12 1 3.2780 6.3935 -3.2644 13 1 1.3029 7.0956 -2.0453 14 6 2.0418 -0.7253 1.2483 15 6 3.5715 -0.7890 1.1994 16 6 4.0043 -1.4816 -0.0956 17 8 3.4694 -0.7743 -1.2162 18 6 2.0416 -0.7248 -1.2476 19 1 -0.3634 0.5113 0.8913 20 1 -0.3633 0.5162 -0.8887 21 1 -0.3633 -1.0277 -0.0028 22 1 1.1477 1.9358 -1.7353 23 1 0.8362 4.5711 -3.7599 24 1 1.7278 -0.1824 2.1399 25 1 1.6355 -1.7363 1.2750 26 1 3.9792 0.2216 1.2243 27 1 3.9402 -1.3527 2.0563 28 1 3.6316 -2.5058 -0.1007 29 1 5.0926 -1.4903 -0.1571 30 1 1.6432 -1.7393 -1.2676 31 1 1.7160 -0.1885 -2.1389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306280457.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:55 Heat of formation + Delta-G solvation = -98.243977 kcal Electronic energy + Delta-G solvation = -15089.663257 eV Core-core repulsion = 12563.538396 eV Total energy + Delta-G solvation = -2526.124861 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86260 -37.20607 -34.16278 -33.63241 -31.96502 -30.71763 -26.56921 -25.21235 -24.55937 -22.37032 -20.93806 -18.40764 -17.67810 -16.13102 -15.70674 -15.11386 -14.57771 -14.39355 -14.15954 -13.56937 -13.19214 -13.06574 -12.17822 -12.10510 -11.72990 -11.57033 -11.52883 -11.22808 -11.07320 -10.57932 -10.31993 -10.27102 -10.08875 -10.00172 -9.41761 -9.08559 -8.13555 -7.88451 -6.36569 -3.76308 3.19562 3.29811 3.37183 3.90723 4.21042 4.34909 4.88810 5.03930 5.18907 5.32860 5.39996 5.47781 5.62393 5.72198 5.78046 5.87548 5.96360 6.05823 6.10128 6.22991 6.32840 6.47125 6.56339 6.66230 7.00046 7.58896 7.60551 8.12314 8.67238 9.23630 9.61464 10.12861 10.81471 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.009370 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.515495 B = 2987.673483 C = 3071.846316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.464 3.536 4 O -0.591 6.591 5 N -0.558 5.558 6 C -0.296 4.296 7 H 0.102 0.898 8 C 0.022 3.978 9 N -0.902 5.902 10 Si 0.928 3.072 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.282 1.282 14 C -0.087 4.087 15 C -0.165 4.165 16 C 0.062 3.938 17 O -0.374 6.374 18 C 0.076 3.924 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.391 0.609 23 H 0.270 0.730 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -9.899 3.088 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C 0.250 3.750 4 O -0.476 6.476 5 N -0.193 5.193 6 C -0.426 4.426 7 H 0.120 0.880 8 C -0.180 4.180 9 N -0.544 5.544 10 Si 0.755 3.245 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.208 1.208 14 C -0.125 4.125 15 C -0.203 4.203 16 C -0.015 4.015 17 O -0.292 6.292 18 C -0.001 4.001 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.224 0.776 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.049 -9.425 3.376 10.011 hybrid contribution -0.309 0.573 -0.326 0.728 sum -0.357 -8.852 3.050 9.369 Atomic orbital electron populations 1.21757 0.93112 1.01546 1.02990 1.21363 0.96702 0.96103 0.97408 1.19412 0.85087 0.86103 0.84429 1.90427 1.42138 1.77116 1.37940 1.41824 1.45524 1.10957 1.20982 1.19751 1.28743 0.86316 1.07757 0.87976 1.25241 0.97000 1.00348 0.95387 1.69620 1.36834 1.36947 1.10964 0.85821 0.78449 0.81858 0.78331 1.19282 1.20774 1.20833 1.21292 0.95655 0.98361 0.97190 1.22372 0.96680 1.04360 0.96870 1.22548 0.98617 0.93713 0.86590 1.87989 1.19932 1.76414 1.44866 1.22611 0.81451 0.98652 0.97381 0.92022 0.91773 0.92496 0.77560 0.91997 0.91168 0.92713 0.87849 0.92067 0.94200 0.89538 0.93284 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.38 37.16 0.31 -1.83 16 2 C -0.11 -2.06 0.63 -155.52 -0.10 -2.16 16 3 C 0.46 11.24 5.87 -10.99 -0.06 11.17 16 4 O -0.59 -16.14 13.42 5.55 0.07 -16.06 16 5 N -0.56 -14.52 5.06 -10.96 -0.06 -14.57 16 6 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 7 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 8 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 9 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 10 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C -0.09 -1.45 4.45 -26.55 -0.12 -1.57 16 15 C -0.17 -2.79 5.82 -26.59 -0.15 -2.94 16 16 C 0.06 0.98 6.84 37.21 0.25 1.23 16 17 O -0.37 -7.19 10.45 -35.23 -0.37 -7.56 16 18 C 0.08 1.32 5.46 37.20 0.20 1.52 16 19 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 20 H 0.06 1.03 7.56 -51.93 -0.39 0.64 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.39 9.78 6.72 -40.82 -0.27 9.50 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.10 2.18 5.82 -51.93 -0.30 1.87 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.69 7.53 -51.93 -0.39 1.30 16 LS Contribution 253.61 15.07 3.82 3.82 Total: -1.00 -31.35 253.61 -4.98 -36.33 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.25 Total: 8.46 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 0.09 Total: -2.66 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.67 Total: -38.78 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.29 Total: -23.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.35 -4.98 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306280457.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.919 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds