Wall clock time and date at job start Sun Mar 29 2020 22:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.57091 * 2 1 4 4 O 1.21291 * 119.99912 * 120.15786 * 3 2 1 5 5 N 1.34771 * 119.99932 * 300.15517 * 3 2 1 6 6 C 1.37097 * 120.00252 * 180.02562 * 5 3 2 7 7 H 1.08006 * 119.99806 * 359.97438 * 6 5 3 8 8 C 1.38943 * 120.00522 * 180.02562 * 6 5 3 9 9 N 1.31416 * 119.99824 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00344 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47015 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47420 * 119.99952 * 10 8 6 13 13 H 1.48496 * 109.47190 * 240.00126 * 10 8 6 14 14 C 1.53177 * 109.52123 * 120.15555 * 2 1 3 15 15 C 1.53179 * 109.10692 * 176.84380 * 14 2 1 16 16 C 1.53100 * 109.15719 * 303.14927 * 15 14 2 17 17 O 1.42905 * 109.48516 * 57.47822 * 16 15 14 18 18 C 1.42902 * 114.09897 * 298.88856 * 17 16 15 19 19 H 1.08993 * 109.47432 * 299.84196 * 1 2 3 20 20 H 1.09006 * 109.46991 * 59.84666 * 1 2 3 21 21 H 1.09000 * 109.47049 * 179.84182 * 1 2 3 22 22 H 0.96997 * 119.99955 * 0.02562 * 5 3 2 23 23 H 0.97004 * 119.99639 * 180.02562 * 9 8 6 24 24 H 1.09002 * 109.54459 * 296.75600 * 14 2 1 25 25 H 1.08999 * 109.54390 * 56.93522 * 14 2 1 26 26 H 1.08997 * 109.52685 * 62.97182 * 15 14 2 27 27 H 1.08999 * 109.52226 * 183.15941 * 15 14 2 28 28 H 1.09002 * 109.41285 * 297.49784 * 16 15 14 29 29 H 1.09000 * 109.48554 * 177.50179 * 16 15 14 30 30 H 1.09006 * 109.47676 * 301.17676 * 18 17 16 31 31 H 1.08996 * 109.47921 * 181.14393 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4200 0.0000 4 8 2.7352 1.8146 0.9082 5 7 1.7081 2.2513 -1.0092 6 6 2.1677 3.5429 -1.0095 7 1 2.7913 3.8944 -0.2008 8 6 1.8305 4.4002 -2.0497 9 7 1.0713 3.9727 -3.0335 10 14 2.4562 6.1603 -2.0497 11 1 3.2858 6.3907 -0.8397 12 1 3.2780 6.3935 -3.2644 13 1 1.3029 7.0956 -2.0453 14 6 2.0418 -0.7253 1.2483 15 6 3.5715 -0.7890 1.1994 16 6 4.0043 -1.4816 -0.0956 17 8 3.4694 -0.7743 -1.2162 18 6 2.0416 -0.7248 -1.2476 19 1 -0.3634 0.5113 0.8913 20 1 -0.3633 0.5162 -0.8887 21 1 -0.3633 -1.0277 -0.0028 22 1 1.1477 1.9358 -1.7353 23 1 0.8362 4.5711 -3.7599 24 1 1.7278 -0.1824 2.1399 25 1 1.6355 -1.7363 1.2750 26 1 3.9792 0.2216 1.2243 27 1 3.9402 -1.3527 2.0563 28 1 3.6316 -2.5058 -0.1007 29 1 5.0926 -1.4903 -0.1571 30 1 1.6432 -1.7393 -1.2676 31 1 1.7160 -0.1885 -2.1389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306280457.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:55 Heat of formation + Delta-G solvation = -120.992116 kcal Electronic energy + Delta-G solvation = -15090.649690 eV Core-core repulsion = 12563.538396 eV Total energy + Delta-G solvation = -2527.111294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.42413 -38.91645 -36.08457 -35.24072 -33.61104 -32.48348 -27.82760 -27.20314 -25.92848 -23.93594 -22.41759 -20.31292 -19.56342 -17.74464 -17.11048 -16.75215 -16.33380 -15.89770 -15.86174 -15.14127 -14.85490 -14.77154 -13.60367 -13.51152 -13.41628 -13.01568 -12.93493 -12.86674 -12.75234 -12.41817 -12.13422 -11.93914 -11.51675 -11.43139 -11.27337 -10.47522 -10.03201 -9.92338 -8.46268 -5.94194 1.34970 1.39139 1.53596 2.07584 2.29321 2.98169 3.20883 3.26513 3.70630 3.93347 3.97926 4.16206 4.31116 4.40063 4.55837 4.58273 4.74094 4.76150 4.79184 4.94832 5.01737 5.07510 5.26901 5.32865 5.39826 5.60530 6.02210 6.32799 6.61185 7.13952 7.59055 8.14924 8.71658 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.009370 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.515495 B = 2987.673483 C = 3071.846316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C 0.457 3.543 4 O -0.629 6.629 5 N -0.569 5.569 6 C -0.333 4.333 7 H 0.075 0.925 8 C -0.014 4.014 9 N -0.920 5.920 10 Si 0.992 3.008 11 H -0.275 1.275 12 H -0.271 1.271 13 H -0.268 1.268 14 C -0.087 4.087 15 C -0.166 4.166 16 C 0.059 3.941 17 O -0.409 6.409 18 C 0.076 3.924 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.102 0.898 22 H 0.394 0.606 23 H 0.277 0.723 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -11.628 2.876 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 C 0.245 3.755 4 O -0.517 6.517 5 N -0.205 5.205 6 C -0.462 4.462 7 H 0.093 0.907 8 C -0.213 4.213 9 N -0.561 5.561 10 Si 0.815 3.185 11 H -0.200 1.200 12 H -0.196 1.196 13 H -0.193 1.193 14 C -0.124 4.124 15 C -0.204 4.204 16 C -0.017 4.017 17 O -0.329 6.329 18 C -0.001 4.001 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.120 0.880 22 H 0.228 0.772 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.720 -11.173 3.155 11.632 hybrid contribution -0.073 1.066 -0.213 1.090 sum -0.794 -10.107 2.942 10.556 Atomic orbital electron populations 1.21758 0.90815 1.04228 1.02142 1.21422 0.98472 0.91882 0.99400 1.20634 0.83579 0.88360 0.82886 1.90407 1.43496 1.78636 1.39145 1.41890 1.46132 1.10645 1.21838 1.19681 1.30212 0.88222 1.08109 0.90715 1.26018 0.96771 1.03950 0.94580 1.69678 1.36934 1.38334 1.11184 0.84897 0.78240 0.77139 0.78198 1.19985 1.19620 1.19347 1.21366 0.95502 1.00252 0.95308 1.22320 0.96965 1.02000 0.99079 1.22759 0.99275 0.95001 0.84688 1.87944 1.21089 1.77456 1.46362 1.22712 0.80844 1.00714 0.95857 0.92925 0.92683 0.87953 0.77240 0.91334 0.92887 0.88056 0.93111 0.89076 0.90221 0.88823 0.88593 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.38 71.98 0.60 -3.23 16 2 C -0.11 -3.83 0.63 -52.84 -0.03 -3.86 16 3 C 0.46 22.77 5.87 87.66 0.51 23.29 16 4 O -0.63 -36.03 13.42 -3.06 -0.04 -36.07 16 5 N -0.57 -30.66 5.06 -306.99 -1.55 -32.21 16 6 C -0.33 -19.73 9.68 84.04 0.81 -18.91 16 7 H 0.07 4.74 7.16 -2.91 -0.02 4.72 16 8 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 9 N -0.92 -51.09 13.05 21.66 0.28 -50.80 16 10 Si 0.99 44.46 29.55 68.60 2.03 46.49 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 C -0.09 -2.67 4.45 30.71 0.14 -2.54 16 15 C -0.17 -5.36 5.82 30.69 0.18 -5.18 16 16 C 0.06 1.70 6.84 72.02 0.49 2.19 16 17 O -0.41 -15.19 10.45 -148.98 -1.56 -16.75 16 18 C 0.08 2.44 5.46 72.01 0.39 2.83 16 19 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.05 1.69 7.56 -2.38 -0.02 1.67 16 21 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.39 20.26 6.72 -92.71 -0.62 19.64 16 23 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.05 1.80 8.02 -2.39 -0.02 1.78 16 25 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 2.19 5.82 -2.39 -0.01 2.18 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.08 2.82 7.53 -2.39 -0.02 2.80 16 Total: -1.00 -70.84 253.61 3.23 -67.62 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.50 Total: 27.44 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 3.57 Total: -5.71 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.27 Total: -83.02 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -1.60 Total: -52.82 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.84 3.23 -67.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306280457.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.373 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds