Wall clock time and date at job start Sun Mar 29 2020 22:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.57520 * 2 1 4 4 O 1.21292 * 120.00015 * 239.84135 * 3 2 1 5 5 N 1.34777 * 119.99998 * 59.84529 * 3 2 1 6 6 C 1.37087 * 120.00062 * 180.02562 * 5 3 2 7 7 H 1.08006 * 120.00310 * 359.97438 * 6 5 3 8 8 C 1.38957 * 119.99974 * 179.97438 * 6 5 3 9 9 N 1.31405 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99753 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47198 * 60.00527 * 10 8 6 12 12 H 1.48500 * 109.46834 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47506 * 299.99946 * 10 8 6 14 14 C 1.53180 * 109.52251 * 239.83984 * 2 1 3 15 15 C 1.53175 * 109.03606 * 183.11473 * 14 2 1 16 16 C 1.53092 * 109.16344 * 56.98567 * 15 14 2 17 17 O 1.42905 * 109.41215 * 302.38824 * 16 15 14 18 18 C 1.42905 * 114.09831 * 61.16158 * 17 16 15 19 19 H 1.09002 * 109.47271 * 180.15198 * 1 2 3 20 20 H 1.08996 * 109.47155 * 300.15997 * 1 2 3 21 21 H 1.08996 * 109.46702 * 60.15633 * 1 2 3 22 22 H 0.97000 * 119.99682 * 359.97438 * 5 3 2 23 23 H 0.96996 * 120.00235 * 179.97438 * 9 8 6 24 24 H 1.09005 * 109.54069 * 63.25065 * 14 2 1 25 25 H 1.08996 * 109.62096 * 303.02972 * 14 2 1 26 26 H 1.09004 * 109.52714 * 297.07587 * 15 14 2 27 27 H 1.08998 * 109.52443 * 176.88852 * 15 14 2 28 28 H 1.08997 * 109.48111 * 182.40965 * 16 15 14 29 29 H 1.08999 * 109.49220 * 62.37875 * 16 15 14 30 30 H 1.09000 * 109.47932 * 58.81878 * 18 17 16 31 31 H 1.08993 * 109.48024 * 178.86013 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0349 1.4199 0.0000 4 8 2.7353 1.8145 -0.9082 5 7 1.7083 2.2513 1.0092 6 6 2.1671 3.5431 1.0090 7 1 2.7908 3.8945 0.2002 8 6 1.8299 4.4004 2.0493 9 7 1.0707 3.9730 3.0330 10 14 2.4558 6.1604 2.0492 11 1 1.9655 6.8601 0.8346 12 1 1.9579 6.8628 3.2592 13 1 3.9407 6.1578 2.0536 14 6 2.0419 -0.7254 -1.2483 15 6 3.5716 -0.7872 -1.1981 16 6 4.0043 -1.4818 0.0957 17 8 3.4694 -0.7744 1.2163 18 6 2.0416 -0.7250 1.2477 19 1 -0.3634 -1.0277 0.0027 20 1 -0.3633 0.5163 0.8885 21 1 -0.3632 0.5114 -0.8914 22 1 1.1479 1.9357 1.7354 23 1 0.8356 4.5713 3.7594 24 1 1.7280 -0.1825 -2.1399 25 1 1.6368 -1.7369 -1.2758 26 1 3.9781 0.2239 -1.2224 27 1 3.9417 -1.3501 -2.0550 28 1 5.0925 -1.4905 0.1572 29 1 3.6317 -2.5061 0.1008 30 1 1.6431 -1.7393 1.2677 31 1 1.7159 -0.1886 2.1388 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306280458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:57 Heat of formation + Delta-G solvation = -120.785890 kcal Electronic energy + Delta-G solvation = -15090.845552 eV Core-core repulsion = 12563.743201 eV Total energy + Delta-G solvation = -2527.102351 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.42377 -38.91456 -36.08261 -35.23865 -33.61083 -32.48224 -27.82767 -27.19840 -25.92726 -23.93286 -22.41630 -20.31144 -19.56159 -17.74270 -17.10769 -16.74845 -16.33226 -15.90264 -15.86204 -15.14238 -14.85230 -14.76415 -13.59629 -13.51003 -13.40895 -13.01324 -12.93258 -12.86401 -12.75101 -12.44291 -12.13554 -11.93817 -11.50924 -11.42901 -11.27128 -10.47372 -10.03229 -9.92287 -8.45786 -5.93841 1.38229 1.39102 1.50398 2.07892 2.29508 2.98257 3.21140 3.26747 3.70688 3.93422 3.98079 4.16494 4.31157 4.40078 4.55844 4.58304 4.74133 4.76217 4.79232 4.94850 5.01774 5.07501 5.26951 5.32930 5.39497 5.60688 6.02098 6.32842 6.61458 7.13923 7.59201 8.15132 8.71700 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043035 B = 0.009370 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.483120 B = 2987.448722 C = 3071.650817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C 0.457 3.543 4 O -0.629 6.629 5 N -0.569 5.569 6 C -0.335 4.335 7 H 0.075 0.925 8 C -0.013 4.013 9 N -0.920 5.920 10 Si 0.991 3.009 11 H -0.271 1.271 12 H -0.268 1.268 13 H -0.274 1.274 14 C -0.087 4.087 15 C -0.166 4.166 16 C 0.059 3.941 17 O -0.409 6.409 18 C 0.076 3.924 19 H 0.102 0.898 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.394 0.606 23 H 0.278 0.722 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -11.605 -2.863 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 C 0.245 3.755 4 O -0.517 6.517 5 N -0.204 5.204 6 C -0.465 4.465 7 H 0.093 0.907 8 C -0.213 4.213 9 N -0.561 5.561 10 Si 0.815 3.185 11 H -0.197 1.197 12 H -0.192 1.192 13 H -0.199 1.199 14 C -0.124 4.124 15 C -0.204 4.204 16 C -0.017 4.017 17 O -0.329 6.329 18 C -0.001 4.001 19 H 0.120 0.880 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.228 0.772 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.724 -11.148 -3.133 11.602 hybrid contribution -0.064 1.065 0.198 1.085 sum -0.788 -10.083 -2.935 10.531 Atomic orbital electron populations 1.21758 0.90825 1.04223 1.02138 1.21421 0.98465 0.91891 0.99397 1.20629 0.83610 0.88359 0.82892 1.90405 1.43511 1.78636 1.39148 1.41878 1.46130 1.10612 1.21827 1.19619 1.30402 0.88249 1.08183 0.90677 1.26018 0.96737 1.03948 0.94558 1.69657 1.36816 1.38480 1.11134 0.85021 0.78447 0.76996 0.78046 1.19652 1.19237 1.19950 1.21366 0.95495 1.00250 0.95307 1.22322 0.96975 1.02002 0.99080 1.22760 0.99276 0.94999 0.84686 1.87944 1.21089 1.77444 1.46388 1.22713 0.80842 1.00710 0.95859 0.87954 0.92687 0.92934 0.77242 0.91305 0.92891 0.88049 0.93076 0.89109 0.88835 0.90206 0.88594 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.39 71.98 0.60 -3.24 16 2 C -0.11 -3.83 0.63 -52.83 -0.03 -3.86 16 3 C 0.46 22.76 5.87 87.66 0.51 23.27 16 4 O -0.63 -36.01 13.41 -3.07 -0.04 -36.05 16 5 N -0.57 -30.64 5.06 -306.98 -1.55 -32.19 16 6 C -0.33 -19.86 9.68 84.04 0.81 -19.04 16 7 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 8 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 9 N -0.92 -51.09 13.05 21.66 0.28 -50.81 16 10 Si 0.99 44.41 29.55 68.60 2.03 46.44 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 C -0.09 -2.67 4.45 30.71 0.14 -2.54 16 15 C -0.17 -5.37 5.81 30.68 0.18 -5.19 16 16 C 0.06 1.70 6.84 72.01 0.49 2.19 16 17 O -0.41 -15.21 10.45 -148.98 -1.56 -16.76 16 18 C 0.08 2.44 5.47 72.01 0.39 2.84 16 19 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 20 H 0.05 1.69 7.56 -2.39 -0.02 1.67 16 21 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.39 20.27 6.72 -92.71 -0.62 19.65 16 23 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 24 H 0.05 1.80 8.02 -2.38 -0.02 1.78 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 2.21 5.81 -2.39 -0.01 2.19 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 2.82 7.53 -2.39 -0.02 2.81 16 Total: -1.00 -70.71 253.59 3.23 -67.48 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.50 Total: 27.72 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 3.57 Total: -5.82 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -1.27 Total: -83.00 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -1.60 Total: -52.82 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.71 3.23 -67.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306280458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.305 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds