Wall clock time and date at job start Sun Mar 29 2020 21:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34417 * 124.34325 * 2 1 4 4 O 1.21283 * 124.94929 * 359.62788 * 3 2 1 5 5 C 1.51285 * 110.11460 * 179.59342 * 3 2 1 6 6 C 1.54628 * 104.19283 * 343.74417 * 5 3 2 7 7 C 1.46762 * 124.35360 * 179.97438 * 2 1 3 8 8 H 1.09003 * 110.31762 * 316.05614 * 7 2 1 9 9 C 1.50700 * 110.24638 * 78.01525 * 7 2 1 10 10 O 1.21213 * 119.99758 * 16.04847 * 9 7 2 11 11 O 1.34307 * 119.99699 * 196.32586 * 9 7 2 12 12 C 1.34923 * 117.00000 * 179.72351 * 11 9 7 13 13 H 1.08007 * 119.99533 * 0.02562 * 12 11 9 14 14 C 1.38749 * 120.00389 * 179.97438 * 12 11 9 15 15 N 1.31448 * 119.99849 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00396 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47207 * 89.99987 * 16 14 12 18 18 H 1.48496 * 109.47178 * 210.00474 * 16 14 12 19 19 H 1.48499 * 109.46751 * 330.00591 * 16 14 12 20 20 H 1.08994 * 109.47555 * 269.99788 * 1 2 3 21 21 H 1.08998 * 109.47685 * 30.00591 * 1 2 3 22 22 H 1.09004 * 109.46723 * 150.00100 * 1 2 3 23 23 H 1.09005 * 110.48671 * 225.07349 * 5 3 2 24 24 H 1.08999 * 110.49006 * 102.42589 * 5 3 2 25 25 H 1.08995 * 110.97381 * 266.67914 * 6 5 3 26 26 H 1.09002 * 110.97097 * 142.91699 * 6 5 3 27 27 H 0.97000 * 119.99514 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2233 1.1098 0.0000 4 8 1.7945 2.2443 -0.0065 5 6 3.6897 0.7380 0.0101 6 6 3.7010 -0.7485 0.4357 7 6 2.2932 -1.2116 0.0005 8 1 1.8991 -1.9391 0.7102 9 6 2.3451 -1.8085 -1.3823 10 8 2.0063 -1.1480 -2.3405 11 8 2.7614 -3.0740 -1.5522 12 6 2.7785 -3.5489 -2.8150 13 1 2.4664 -2.9173 -3.6336 14 6 3.1980 -4.8482 -3.0620 15 7 3.5783 -5.6167 -2.0657 16 14 3.2224 -5.5054 -4.8104 17 1 4.5445 -5.2258 -5.4260 18 1 2.9851 -6.9712 -4.7916 19 1 2.1568 -4.8415 -5.6036 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 4.2325 1.3461 0.7338 24 1 4.1194 0.8532 -0.9850 25 1 3.8269 -0.8446 1.5141 26 1 4.4754 -1.3008 -0.0966 27 1 3.8712 -6.5251 -2.2384 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306292942.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:49 Heat of formation + Delta-G solvation = -109.012131 kcal Electronic energy + Delta-G solvation = -14341.921043 eV Core-core repulsion = 11679.496145 eV Total energy + Delta-G solvation = -2662.424897 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.47838 -38.67080 -36.24051 -34.90818 -32.63147 -32.19754 -28.28096 -26.44377 -25.31688 -22.56260 -20.57461 -19.01223 -17.84630 -17.21490 -16.42766 -15.58778 -15.16464 -14.63965 -14.41842 -14.12386 -13.56131 -13.34742 -12.82440 -12.47473 -12.22661 -12.01711 -11.68387 -11.47390 -11.10972 -11.03319 -10.49273 -10.45302 -9.91343 -9.61124 -9.37510 -8.65912 -8.42868 -6.49645 -4.17855 2.77467 3.02101 3.10848 3.16543 3.22950 3.37134 3.89075 4.42260 4.53676 4.67379 5.04920 5.06494 5.32351 5.50658 5.54276 5.71802 5.81146 5.93623 6.00751 6.10190 6.47201 6.73416 7.28509 7.32247 7.85852 8.36896 8.60736 8.99195 9.73344 10.67637 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.054890 B = 0.007985 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.992396 B = 3505.609895 C = 3616.445789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.598 5.598 3 C 0.526 3.474 4 O -0.542 6.542 5 C -0.155 4.155 6 C -0.116 4.116 7 C 0.148 3.852 8 H 0.114 0.886 9 C 0.381 3.619 10 O -0.544 6.544 11 O -0.209 6.209 12 C -0.383 4.383 13 H 0.095 0.905 14 C 0.044 3.956 15 N -0.863 5.863 16 Si 0.943 3.057 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.267 1.267 20 H 0.056 0.944 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 4.751 5.705 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.331 5.331 3 C 0.314 3.686 4 O -0.420 6.420 5 C -0.195 4.195 6 C -0.154 4.154 7 C 0.041 3.959 8 H 0.131 0.869 9 C 0.225 3.775 10 O -0.440 6.440 11 O -0.116 6.116 12 C -0.459 4.459 13 H 0.113 0.887 14 C -0.160 4.160 15 N -0.500 5.500 16 Si 0.768 3.232 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.191 1.191 20 H 0.075 0.925 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.716 5.267 5.482 7.636 hybrid contribution -0.076 -0.549 -0.958 1.107 sum -0.792 4.718 4.524 6.584 Atomic orbital electron populations 1.21521 0.77852 1.03582 1.01244 1.47842 1.06512 1.06289 1.72485 1.20817 0.89383 0.84071 0.74282 1.90672 1.78958 1.20999 1.51330 1.22360 0.94700 0.97455 1.05016 1.22556 0.95101 0.94987 1.02782 1.20977 0.93073 0.87654 0.94154 0.86859 1.23393 0.80256 0.82908 0.90901 1.90589 1.48894 1.62239 1.42287 1.83864 1.69862 1.24892 1.32962 1.21226 1.45823 0.97217 0.81662 0.88700 1.25329 0.95790 0.94928 0.99976 1.69985 1.40479 1.08255 1.31232 0.85675 0.79169 0.78045 0.80352 1.19801 1.20262 1.19108 0.92544 0.90753 0.90885 0.87892 0.87528 0.88862 0.87994 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 10.96 59.85 0.66 2.15 15 2 N -0.60 -10.32 2.55 -174.03 -0.44 -10.77 15 3 C 0.53 9.41 8.02 -10.86 -0.09 9.32 15 4 O -0.54 -11.18 17.59 5.56 0.10 -11.08 15 5 C -0.16 -2.22 6.85 -26.74 -0.18 -2.41 15 6 C -0.12 -1.62 6.69 -25.11 -0.17 -1.79 15 7 C 0.15 2.55 3.61 -68.17 -0.25 2.30 15 8 H 0.11 1.71 8.14 -51.93 -0.42 1.29 15 9 C 0.38 8.90 7.08 36.01 0.25 9.16 15 10 O -0.54 -14.31 15.79 -19.05 -0.30 -14.62 15 11 O -0.21 -5.66 9.75 -20.70 -0.20 -5.86 15 12 C -0.38 -10.93 9.65 30.92 0.30 -10.63 15 13 H 0.10 2.76 6.86 -52.48 -0.36 2.40 15 14 C 0.04 1.20 5.49 -17.53 -0.10 1.11 15 15 N -0.86 -24.28 13.67 55.48 0.76 -23.52 15 16 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 15 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.07 1.14 7.92 -51.93 -0.41 0.73 15 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.11 1.59 8.14 -51.93 -0.42 1.17 15 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.10 1.50 7.89 -51.93 -0.41 1.09 15 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 248.38 15.07 3.74 3.74 Total: -1.00 -34.11 248.38 -3.79 -37.90 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.85 Total: -0.71 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 0.43 Total: 9.22 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.32 Total: -34.29 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.40 Total: -31.56 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -34.11 -3.79 -37.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306292942.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.109 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds