Wall clock time and date at job start Sun Mar 29 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48507 * 109.47007 * 240.00467 * 3 2 1 5 5 H 1.48498 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47237 * 120.00292 * 3 2 1 7 7 C 1.40053 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00554 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99508 * 359.97438 * 7 2 1 10 10 O 1.21685 * 120.00188 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99437 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99690 * 184.72665 * 11 9 7 13 13 C 1.52993 * 110.54132 * 293.74854 * 12 11 9 14 14 O 1.42903 * 109.46974 * 306.52757 * 13 12 11 15 15 C 1.54269 * 110.48629 * 56.36383 * 12 11 9 16 16 C 1.53870 * 106.60208 * 95.06477 * 15 12 11 17 17 C 1.54269 * 106.59687 * 0.02562 * 16 15 12 18 18 C 1.54887 * 110.48409 * 171.13600 * 12 11 9 19 19 H 0.97005 * 119.99822 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00589 * 4.72157 * 11 9 7 21 21 H 1.08999 * 109.46962 * 66.51984 * 13 12 11 22 22 H 1.08994 * 109.47321 * 186.52334 * 13 12 11 23 23 H 0.96702 * 113.99809 * 180.02562 * 14 13 12 24 24 H 1.09000 * 110.03075 * 335.78186 * 15 12 11 25 25 H 1.09001 * 110.02803 * 214.35390 * 15 12 11 26 26 H 1.09008 * 110.03209 * 119.28061 * 16 15 12 27 27 H 1.08994 * 110.03591 * 240.71438 * 16 15 12 28 28 H 1.09000 * 110.48524 * 142.28812 * 17 16 15 29 29 H 1.09004 * 110.48296 * 264.92897 * 17 16 15 30 30 H 1.09002 * 110.75593 * 160.95546 * 18 12 11 31 31 H 1.09001 * 110.76020 * 37.57672 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7464 -0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0580 -2.4804 -0.0005 11 7 1.9488 -3.6477 -0.0005 12 6 1.2199 -4.9143 -0.1051 13 6 0.3605 -5.1434 1.1397 14 8 1.1758 -5.0338 2.3082 15 6 0.3452 -4.9306 -1.3757 16 6 1.1696 -5.6338 -2.4681 17 6 2.5164 -6.0210 -1.8231 18 6 2.2056 -6.0918 -0.3075 19 1 -0.4850 0.8401 -0.0004 20 1 2.9163 -3.6493 0.0686 21 1 -0.4310 -4.3950 1.1775 22 1 -0.0821 -6.1386 1.0975 23 1 0.6957 -5.1683 3.1368 24 1 0.1126 -3.9106 -1.6819 25 1 -0.5752 -5.4836 -1.1882 26 1 0.6493 -6.5283 -2.8108 27 1 1.3371 -4.9553 -3.3044 28 1 2.8502 -6.9915 -2.1902 29 1 3.2683 -5.2575 -2.0225 30 1 1.7316 -7.0402 -0.0548 31 1 3.1115 -5.9427 0.2801 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306304598.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:08 Heat of formation + Delta-G solvation = -101.459608 kcal Electronic energy + Delta-G solvation = -14969.225943 eV Core-core repulsion = 12442.961642 eV Total energy + Delta-G solvation = -2526.264301 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.01737 -36.03587 -35.52632 -32.52787 -31.58965 -28.72532 -28.22383 -25.88217 -23.75281 -20.58183 -20.13710 -18.17339 -17.05209 -16.64617 -15.30882 -15.22538 -14.78436 -14.23420 -13.79402 -13.47731 -12.84884 -12.26801 -12.05050 -11.89034 -11.27088 -11.04316 -10.82701 -10.75397 -10.67210 -10.59635 -10.37182 -10.17460 -10.08815 -9.96525 -9.31406 -8.77152 -7.41856 -7.30930 -6.10301 -4.55065 3.19680 3.24151 3.26285 4.16093 4.65781 4.70410 4.93303 5.09549 5.21465 5.35393 5.75452 5.85313 5.87483 6.01890 6.03135 6.10725 6.21137 6.26190 6.34314 6.49972 6.60152 6.65895 6.77862 7.10799 7.50355 8.04437 8.18304 8.29645 8.45600 9.10428 9.68585 10.68471 10.89487 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.009639 C = 0.008983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.029598 B = 2904.036270 C = 3116.147188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.563 3.437 10 O -0.580 6.580 11 N -0.743 5.743 12 C 0.192 3.808 13 C 0.072 3.928 14 O -0.564 6.564 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.120 4.120 19 H 0.267 0.733 20 H 0.379 0.621 21 H 0.066 0.934 22 H 0.030 0.970 23 H 0.366 0.634 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -9.498 -0.865 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.367 3.633 10 O -0.464 6.464 11 N -0.397 5.397 12 C 0.103 3.897 13 C -0.007 4.007 14 O -0.367 6.367 15 C -0.165 4.165 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.158 4.158 19 H 0.077 0.923 20 H 0.211 0.789 21 H 0.084 0.916 22 H 0.048 0.952 23 H 0.210 0.790 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.430 -9.268 -1.351 9.676 hybrid contribution 0.432 0.686 0.475 0.940 sum 2.862 -8.582 -0.876 9.089 Atomic orbital electron populations 1.70008 1.06938 1.27081 1.35865 1.25663 0.94576 1.00078 0.92678 0.86494 0.79861 0.81322 0.79383 1.19386 1.20673 1.19371 1.20874 0.93510 0.89638 1.54273 0.91754 1.18052 0.87168 0.82272 0.75854 1.90542 1.13976 1.86913 1.54943 1.45939 1.08518 1.04002 1.81276 1.20629 0.91551 0.85742 0.91769 1.22681 0.94160 0.98230 0.85678 1.86498 1.39062 1.95452 1.15677 1.22442 0.97177 1.02833 0.94041 1.22095 0.95833 0.99356 0.98465 1.22338 0.97741 1.00456 0.95427 1.22694 0.99470 0.97662 0.95949 0.92275 0.78928 0.91607 0.95233 0.78979 0.89004 0.92502 0.92692 0.92186 0.92399 0.91535 0.91394 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.17 11.83 55.55 0.66 -22.51 16 2 C 0.09 2.52 5.50 -17.37 -0.10 2.43 16 3 Si 0.90 20.55 29.56 -169.99 -5.02 15.52 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 8 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.95 6.94 -12.98 -0.09 15.86 16 10 O -0.58 -18.08 11.96 5.20 0.06 -18.02 16 11 N -0.74 -17.13 4.87 -47.46 -0.23 -17.36 16 12 C 0.19 3.77 0.54 -130.16 -0.07 3.70 16 13 C 0.07 1.39 5.67 37.15 0.21 1.60 16 14 O -0.56 -10.66 13.32 -35.23 -0.47 -11.13 16 15 C -0.13 -2.45 5.64 -25.61 -0.14 -2.59 16 16 C -0.12 -1.89 6.80 -25.61 -0.17 -2.06 16 17 C -0.12 -1.78 6.79 -25.08 -0.17 -1.95 16 18 C -0.12 -1.89 5.77 -24.75 -0.14 -2.03 16 19 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 20 H 0.38 8.11 8.45 -40.82 -0.35 7.77 16 21 H 0.07 1.51 6.73 -51.93 -0.35 1.16 16 22 H 0.03 0.48 8.04 -51.93 -0.42 0.07 16 23 H 0.37 5.17 9.12 45.56 0.42 5.59 16 24 H 0.09 2.19 6.14 -51.93 -0.32 1.87 16 25 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 31 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 LS Contribution 257.10 15.07 3.87 3.87 Total: -1.00 -33.70 257.10 -5.64 -39.34 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -3.49 Total: 11.35 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.02 Total: -1.07 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.43 Total: -39.87 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.41 Total: -29.15 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.70 -5.64 -39.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306304598.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.119 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds