Wall clock time and date at job start Sun Mar 29 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48507 * 109.47007 * 240.00467 * 3 2 1 5 5 H 1.48498 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47237 * 120.00292 * 3 2 1 7 7 C 1.40053 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00554 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99508 * 359.97438 * 7 2 1 10 10 O 1.21685 * 120.00188 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99437 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99690 * 184.72665 * 11 9 7 13 13 C 1.52993 * 110.54132 * 293.74854 * 12 11 9 14 14 O 1.42903 * 109.46974 * 306.52757 * 13 12 11 15 15 C 1.54269 * 110.48629 * 56.36383 * 12 11 9 16 16 C 1.53870 * 106.60208 * 95.06477 * 15 12 11 17 17 C 1.54269 * 106.59687 * 0.02562 * 16 15 12 18 18 C 1.54887 * 110.48409 * 171.13600 * 12 11 9 19 19 H 0.97005 * 119.99822 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00589 * 4.72157 * 11 9 7 21 21 H 1.08999 * 109.46962 * 66.51984 * 13 12 11 22 22 H 1.08994 * 109.47321 * 186.52334 * 13 12 11 23 23 H 0.96702 * 113.99809 * 180.02562 * 14 13 12 24 24 H 1.09000 * 110.03075 * 335.78186 * 15 12 11 25 25 H 1.09001 * 110.02803 * 214.35390 * 15 12 11 26 26 H 1.09008 * 110.03209 * 119.28061 * 16 15 12 27 27 H 1.08994 * 110.03591 * 240.71438 * 16 15 12 28 28 H 1.09000 * 110.48524 * 142.28812 * 17 16 15 29 29 H 1.09004 * 110.48296 * 264.92897 * 17 16 15 30 30 H 1.09002 * 110.75593 * 160.95546 * 18 12 11 31 31 H 1.09001 * 110.76020 * 37.57672 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7464 -0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0580 -2.4804 -0.0005 11 7 1.9488 -3.6477 -0.0005 12 6 1.2199 -4.9143 -0.1051 13 6 0.3605 -5.1434 1.1397 14 8 1.1758 -5.0338 2.3082 15 6 0.3452 -4.9306 -1.3757 16 6 1.1696 -5.6338 -2.4681 17 6 2.5164 -6.0210 -1.8231 18 6 2.2056 -6.0918 -0.3075 19 1 -0.4850 0.8401 -0.0004 20 1 2.9163 -3.6493 0.0686 21 1 -0.4310 -4.3950 1.1775 22 1 -0.0821 -6.1386 1.0975 23 1 0.6957 -5.1683 3.1368 24 1 0.1126 -3.9106 -1.6819 25 1 -0.5752 -5.4836 -1.1882 26 1 0.6493 -6.5283 -2.8108 27 1 1.3371 -4.9553 -3.3044 28 1 2.8502 -6.9915 -2.1902 29 1 3.2683 -5.2575 -2.0225 30 1 1.7316 -7.0402 -0.0548 31 1 3.1115 -5.9427 0.2801 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306304598.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:08 Heat of formation + Delta-G solvation = -128.830371 kcal Electronic energy + Delta-G solvation = -14970.412828 eV Core-core repulsion = 12442.961642 eV Total energy + Delta-G solvation = -2527.451186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65293 -37.99288 -36.98651 -34.63671 -33.48967 -30.33648 -29.59623 -27.98665 -25.21198 -22.51572 -21.42423 -19.90979 -19.06933 -18.14607 -17.35603 -16.81520 -16.28110 -15.77814 -15.51209 -15.11432 -14.61865 -14.08497 -13.80441 -13.42146 -13.04234 -12.79164 -12.57764 -12.32888 -12.25341 -12.06107 -11.99854 -11.90583 -11.58072 -11.26982 -10.91935 -10.81657 -9.60195 -9.25120 -8.22873 -6.78936 1.38410 1.42158 1.52732 2.25723 2.54202 3.12065 3.39978 3.64248 3.80024 3.91029 4.09874 4.36628 4.54355 4.58256 4.61101 4.75961 4.86911 4.98341 5.04163 5.14056 5.15187 5.33275 5.34518 5.39209 5.59184 5.94917 6.29973 6.49472 6.91570 6.92721 7.67630 8.58058 8.76843 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.009639 C = 0.008983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.029598 B = 2904.036270 C = 3116.147188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.580 4.580 8 H 0.078 0.922 9 C 0.549 3.451 10 O -0.618 6.618 11 N -0.734 5.734 12 C 0.174 3.826 13 C 0.076 3.924 14 O -0.577 6.577 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.107 4.107 19 H 0.272 0.728 20 H 0.387 0.613 21 H 0.018 0.982 22 H 0.069 0.931 23 H 0.385 0.615 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -10.672 -1.044 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.617 4.617 8 H 0.096 0.904 9 C 0.352 3.648 10 O -0.505 6.505 11 N -0.387 5.387 12 C 0.086 3.914 13 C -0.003 4.003 14 O -0.383 6.383 15 C -0.166 4.166 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.145 4.145 19 H 0.082 0.918 20 H 0.219 0.781 21 H 0.036 0.964 22 H 0.087 0.913 23 H 0.233 0.767 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.196 -10.491 -1.519 11.400 hybrid contribution -0.156 0.970 0.564 1.132 sum 4.041 -9.521 -0.955 10.387 Atomic orbital electron populations 1.70173 1.09244 1.28610 1.37053 1.26851 0.95503 1.04564 0.91362 0.85170 0.78311 0.75296 0.80097 1.18009 1.19842 1.18154 1.21424 0.94432 0.90788 1.55079 0.90420 1.18316 0.86908 0.83914 0.75645 1.90508 1.15585 1.87874 1.56510 1.45668 1.08836 1.04263 1.79888 1.21040 0.92711 0.85641 0.91986 1.22565 0.92991 0.98752 0.85983 1.86437 1.39664 1.95600 1.16612 1.22382 0.98569 1.00194 0.95412 1.22083 0.96388 0.99931 0.96833 1.22335 0.96517 1.02084 0.94371 1.22656 0.98422 0.96558 0.96874 0.91841 0.78065 0.96369 0.91319 0.76705 0.94570 0.91479 0.89600 0.93170 0.88723 0.92550 0.88731 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.13 11.83 21.84 0.26 -50.87 16 2 C 0.03 1.83 5.50 85.31 0.47 2.30 16 3 Si 0.99 42.42 29.56 68.60 2.03 44.45 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.58 -34.10 9.54 24.83 0.24 -33.86 16 8 H 0.08 4.18 7.85 -2.91 -0.02 4.15 16 9 C 0.55 32.29 6.94 86.36 0.60 32.89 16 10 O -0.62 -40.63 11.96 -4.30 -0.05 -40.68 16 11 N -0.73 -34.30 4.87 -422.28 -2.06 -36.35 16 12 C 0.17 6.73 0.54 4.67 0.00 6.73 16 13 C 0.08 2.93 5.67 71.98 0.41 3.34 16 14 O -0.58 -21.29 13.32 -148.98 -1.98 -23.28 16 15 C -0.13 -4.94 5.64 31.32 0.18 -4.77 16 16 C -0.11 -3.39 6.80 31.32 0.21 -3.18 16 17 C -0.12 -2.98 6.79 31.66 0.21 -2.76 16 18 C -0.11 -3.04 5.77 31.88 0.18 -2.86 16 19 H 0.27 15.42 8.29 -92.70 -0.77 14.65 16 20 H 0.39 16.54 8.45 -92.71 -0.78 15.76 16 21 H 0.02 0.86 6.73 -2.39 -0.02 0.85 16 22 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 23 H 0.39 10.51 9.12 -74.06 -0.68 9.84 16 24 H 0.04 1.81 6.14 -2.39 -0.01 1.79 16 25 H 0.07 2.39 7.84 -2.39 -0.02 2.37 16 26 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.56 8.14 -2.38 -0.02 1.55 16 30 H 0.09 2.23 7.98 -2.39 -0.02 2.21 16 31 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 Total: -1.00 -76.59 257.10 0.38 -76.20 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.31 Total: 32.69 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 2.50 Total: -2.16 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.80 Total: -87.22 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -2.04 Total: -63.95 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -76.59 0.38 -76.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306304598.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.626 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds