Wall clock time and date at job start Sun Mar 29 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46763 * 124.34724 * 2 1 4 4 C 1.54472 * 105.47339 * 162.98243 * 3 2 1 5 5 C 1.54626 * 101.76836 * 25.41472 * 4 3 2 6 6 H 1.09002 * 110.48835 * 216.52487 * 5 4 3 7 7 C 1.50701 * 110.48491 * 94.01076 * 5 4 3 8 8 O 1.21208 * 120.00065 * 1.84631 * 7 5 4 9 9 O 1.34310 * 119.99814 * 181.84372 * 7 5 4 10 10 C 1.34921 * 116.99903 * 180.02562 * 9 7 5 11 11 H 1.07998 * 120.00140 * 359.97438 * 10 9 7 12 12 C 1.38755 * 119.99750 * 180.02562 * 10 9 7 13 13 N 1.31445 * 119.99913 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00374 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47388 * 89.99780 * 14 12 10 16 16 H 1.48506 * 109.47506 * 210.00198 * 14 12 10 17 17 H 1.48507 * 109.47007 * 330.00272 * 14 12 10 18 18 C 1.34418 * 124.35083 * 179.97438 * 2 1 3 19 19 O 1.21276 * 124.93961 * 0.44716 * 18 2 1 20 20 H 1.09004 * 109.46840 * 90.00056 * 1 2 3 21 21 H 1.09000 * 109.47323 * 210.00128 * 1 2 3 22 22 H 1.08996 * 109.47189 * 330.00138 * 1 2 3 23 23 H 1.09004 * 110.24685 * 43.98212 * 3 2 1 24 24 H 1.09002 * 110.32316 * 282.02194 * 3 2 1 25 25 H 1.09006 * 110.97215 * 267.29176 * 4 3 2 26 26 H 1.09003 * 111.00372 * 143.54904 * 4 3 2 27 27 H 0.96998 * 120.00101 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7009 0.7488 0.4357 5 6 3.6898 -0.7377 0.0102 6 1 4.2327 -1.3458 0.7339 7 6 4.2868 -0.8973 -1.3643 8 8 4.7208 0.0695 -1.9526 9 8 4.3380 -2.1109 -1.9374 10 6 4.8853 -2.1844 -3.1684 11 1 5.2572 -1.2912 -3.6482 12 6 4.9692 -3.4074 -3.8185 13 7 5.5019 -3.4789 -5.0180 14 14 4.3253 -4.9522 -2.9889 15 1 2.8955 -5.1440 -3.3412 16 1 5.1104 -6.1256 -3.4498 17 1 4.4581 -4.8153 -1.5162 18 6 2.2235 -1.1098 0.0005 19 8 1.7946 -2.2441 -0.0068 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.8983 1.9384 0.7102 24 1 2.3309 1.6444 -0.9997 25 1 3.8268 0.8450 1.5142 26 1 4.4757 1.3010 -0.0961 27 1 5.5610 -4.3339 -5.4723 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306343208.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:37 Heat of formation + Delta-G solvation = -104.420487 kcal Electronic energy + Delta-G solvation = -14444.287129 eV Core-core repulsion = 11782.061340 eV Total energy + Delta-G solvation = -2662.225789 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.57977 -38.74858 -36.34576 -35.28694 -32.65334 -32.27758 -28.13819 -26.68766 -25.39839 -22.46917 -20.30160 -19.19143 -17.98698 -17.38627 -16.55783 -15.71274 -15.46012 -14.72368 -14.34718 -13.83185 -13.63827 -13.29718 -12.80157 -12.55946 -12.40585 -12.21656 -12.04734 -11.41784 -11.23351 -11.03154 -10.47405 -10.29900 -9.72570 -9.63901 -9.22771 -8.66199 -8.62468 -6.37291 -4.13038 2.61495 3.01401 3.20341 3.32369 3.43116 3.50540 4.06303 4.31708 4.48606 4.55897 4.95342 5.11440 5.18626 5.26294 5.44240 5.49912 5.69852 5.72491 5.92241 6.12917 6.31202 6.58642 7.13854 7.69277 8.02526 8.32159 8.54712 9.00860 9.65872 10.70156 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.010495 C = 0.009136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.146132 B = 2667.325927 C = 3064.117832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.626 5.626 3 C 0.104 3.896 4 C -0.119 4.119 5 C -0.113 4.113 6 H 0.131 0.869 7 C 0.420 3.580 8 O -0.533 6.533 9 O -0.236 6.236 10 C -0.383 4.383 11 H 0.111 0.889 12 C 0.070 3.930 13 N -0.871 5.871 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.256 1.256 18 C 0.530 3.470 19 O -0.512 6.512 20 H 0.056 0.944 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 7.663 12.024 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.362 5.362 3 C -0.019 4.019 4 C -0.157 4.157 5 C -0.135 4.135 6 H 0.149 0.851 7 C 0.265 3.735 8 O -0.428 6.428 9 O -0.143 6.143 10 C -0.458 4.458 11 H 0.129 0.871 12 C -0.135 4.135 13 N -0.510 5.510 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.180 1.180 18 C 0.316 3.684 19 O -0.386 6.386 20 H 0.074 0.926 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.422 7.139 11.675 15.567 hybrid contribution -0.246 -0.649 0.108 0.702 sum -7.668 6.490 11.783 15.484 Atomic orbital electron populations 1.21512 0.78023 1.02775 1.02006 1.48124 1.06480 1.07428 1.74209 1.22128 0.90341 0.87013 1.02404 1.22611 0.97823 0.93211 1.02045 1.21582 0.95368 1.00127 0.96455 0.85143 1.21904 0.81584 0.82721 0.87272 1.90582 1.48227 1.40084 1.63941 1.83576 1.67889 1.30475 1.32346 1.20685 1.38513 0.98034 0.88609 0.87144 1.24539 0.95550 0.98426 0.94963 1.69609 1.41924 1.27217 1.12204 0.86234 0.79168 0.80652 0.81179 1.19713 1.20724 1.17980 1.20345 0.88047 0.84493 0.75493 1.90735 1.78008 1.20897 1.48926 0.92585 0.90730 0.91128 0.90263 0.90517 0.89355 0.87058 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 10.96 59.85 0.66 1.79 15 2 N -0.63 -9.30 3.33 -180.29 -0.60 -9.90 15 3 C 0.10 1.26 7.35 -3.13 -0.02 1.23 15 4 C -0.12 -1.54 6.51 -25.10 -0.16 -1.70 15 5 C -0.11 -2.01 3.43 -91.78 -0.31 -2.33 15 6 H 0.13 2.06 8.14 -51.93 -0.42 1.64 15 7 C 0.42 10.12 7.24 36.01 0.26 10.38 15 8 O -0.53 -13.68 14.70 -19.05 -0.28 -13.96 15 9 O -0.24 -6.62 8.57 -20.70 -0.18 -6.79 15 10 C -0.38 -11.76 10.10 30.92 0.31 -11.45 15 11 H 0.11 3.65 7.09 -52.49 -0.37 3.28 15 12 C 0.07 2.07 5.49 -17.53 -0.10 1.98 15 13 N -0.87 -26.33 13.96 55.48 0.77 -25.56 15 14 Si 0.90 22.98 28.62 -169.99 -4.86 18.11 15 15 H -0.27 -6.89 7.11 56.52 0.40 -6.49 15 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 17 H -0.26 -6.55 7.11 56.52 0.40 -6.14 15 18 C 0.53 10.05 7.33 -10.86 -0.08 9.97 15 19 O -0.51 -11.61 17.59 5.56 0.10 -11.51 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.07 0.89 7.93 -51.93 -0.41 0.48 15 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.11 1.54 6.93 -51.93 -0.36 1.18 15 27 H 0.28 7.74 8.31 -40.82 -0.34 7.40 15 LS Contribution 245.61 15.07 3.70 3.70 Total: -1.00 -35.84 245.61 -3.61 -39.45 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -2.81 Total: -3.41 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 0.55 Total: 9.87 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.17 Total: -35.45 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.36 Total: -32.27 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.86 Total: 18.11 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -35.84 -3.61 -39.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343208.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.967 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds