Wall clock time and date at job start Sun Mar 29 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46763 * 124.34724 * 2 1 4 4 C 1.54472 * 105.47339 * 162.98243 * 3 2 1 5 5 C 1.54626 * 101.76836 * 25.41472 * 4 3 2 6 6 H 1.09002 * 110.48835 * 216.52487 * 5 4 3 7 7 C 1.50701 * 110.48491 * 94.01076 * 5 4 3 8 8 O 1.21208 * 120.00065 * 1.84631 * 7 5 4 9 9 O 1.34310 * 119.99814 * 181.84372 * 7 5 4 10 10 C 1.34921 * 116.99903 * 180.02562 * 9 7 5 11 11 H 1.07998 * 120.00140 * 359.97438 * 10 9 7 12 12 C 1.38755 * 119.99750 * 180.02562 * 10 9 7 13 13 N 1.31445 * 119.99913 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00374 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47388 * 89.99780 * 14 12 10 16 16 H 1.48506 * 109.47506 * 210.00198 * 14 12 10 17 17 H 1.48507 * 109.47007 * 330.00272 * 14 12 10 18 18 C 1.34418 * 124.35083 * 179.97438 * 2 1 3 19 19 O 1.21276 * 124.93961 * 0.44716 * 18 2 1 20 20 H 1.09004 * 109.46840 * 90.00056 * 1 2 3 21 21 H 1.09000 * 109.47323 * 210.00128 * 1 2 3 22 22 H 1.08996 * 109.47189 * 330.00138 * 1 2 3 23 23 H 1.09004 * 110.24685 * 43.98212 * 3 2 1 24 24 H 1.09002 * 110.32316 * 282.02194 * 3 2 1 25 25 H 1.09006 * 110.97215 * 267.29176 * 4 3 2 26 26 H 1.09003 * 111.00372 * 143.54904 * 4 3 2 27 27 H 0.96998 * 120.00101 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7009 0.7488 0.4357 5 6 3.6898 -0.7377 0.0102 6 1 4.2327 -1.3458 0.7339 7 6 4.2868 -0.8973 -1.3643 8 8 4.7208 0.0695 -1.9526 9 8 4.3380 -2.1109 -1.9374 10 6 4.8853 -2.1844 -3.1684 11 1 5.2572 -1.2912 -3.6482 12 6 4.9692 -3.4074 -3.8185 13 7 5.5019 -3.4789 -5.0180 14 14 4.3253 -4.9522 -2.9889 15 1 2.8955 -5.1440 -3.3412 16 1 5.1104 -6.1256 -3.4498 17 1 4.4581 -4.8153 -1.5162 18 6 2.2235 -1.1098 0.0005 19 8 1.7946 -2.2441 -0.0068 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.8983 1.9384 0.7102 24 1 2.3309 1.6444 -0.9997 25 1 3.8268 0.8450 1.5142 26 1 4.4757 1.3010 -0.0961 27 1 5.5610 -4.3339 -5.4723 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306343208.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:37 Heat of formation + Delta-G solvation = -131.008846 kcal Electronic energy + Delta-G solvation = -14445.440087 eV Core-core repulsion = 11782.061340 eV Total energy + Delta-G solvation = -2663.378747 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.09890 -40.59795 -37.95701 -37.12791 -34.58896 -33.86704 -29.51656 -27.84096 -27.36681 -23.93945 -21.81841 -20.70868 -20.23133 -19.10344 -17.88195 -17.46023 -17.03629 -16.39866 -16.09296 -15.64075 -14.87004 -14.71969 -14.56059 -14.24241 -13.83317 -13.57733 -13.35040 -13.17080 -12.53629 -12.49607 -12.29701 -12.14120 -11.92068 -11.36485 -10.99349 -10.90574 -9.79861 -8.62997 -6.48377 0.98649 1.23364 1.30541 1.48384 1.49570 1.99175 2.21173 2.38273 2.82815 3.21678 3.38445 3.84459 4.14156 4.31499 4.35931 4.42792 4.60966 4.66714 4.83957 4.97353 5.11267 5.39799 5.49711 5.81304 5.90124 6.39424 6.74273 6.95955 7.49110 8.49336 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.010495 C = 0.009136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.146132 B = 2667.325927 C = 3064.117832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.617 5.617 3 C 0.099 3.901 4 C -0.108 4.108 5 C -0.114 4.114 6 H 0.153 0.847 7 C 0.422 3.578 8 O -0.552 6.552 9 O -0.256 6.256 10 C -0.409 4.409 11 H 0.068 0.932 12 C 0.026 3.974 13 N -0.907 5.907 14 Si 0.970 3.030 15 H -0.270 1.270 16 H -0.253 1.253 17 H -0.260 1.260 18 C 0.517 3.483 19 O -0.560 6.560 20 H 0.051 0.949 21 H 0.067 0.933 22 H 0.117 0.883 23 H 0.134 0.866 24 H 0.063 0.937 25 H 0.138 0.862 26 H 0.100 0.900 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 8.328 14.317 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.351 5.351 3 C -0.022 4.022 4 C -0.146 4.146 5 C -0.137 4.137 6 H 0.170 0.830 7 C 0.268 3.732 8 O -0.447 6.447 9 O -0.165 6.165 10 C -0.484 4.484 11 H 0.086 0.914 12 C -0.175 4.175 13 N -0.547 5.547 14 Si 0.791 3.209 15 H -0.195 1.195 16 H -0.177 1.177 17 H -0.184 1.184 18 C 0.304 3.696 19 O -0.439 6.439 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.135 0.865 23 H 0.152 0.848 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.119 0.881 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.580 7.878 13.958 18.180 hybrid contribution 0.094 -0.633 -0.582 0.865 sum -8.486 7.245 13.376 17.419 Atomic orbital electron populations 1.21800 0.75987 1.04791 1.02414 1.48337 1.07927 1.07085 1.71757 1.22421 0.89752 0.86705 1.03356 1.22767 0.98083 0.88875 1.04839 1.21851 0.94975 1.04425 0.92425 0.82979 1.23299 0.79702 0.81270 0.88947 1.90564 1.48554 1.40437 1.65183 1.83609 1.68879 1.32643 1.31332 1.20400 1.40469 0.97280 0.90292 0.91402 1.25382 0.95336 1.01349 0.95473 1.69672 1.42763 1.28801 1.13415 0.85266 0.78768 0.77198 0.79694 1.19505 1.17717 1.18366 1.20534 0.88668 0.84793 0.75645 1.90700 1.78759 1.22896 1.51528 0.92989 0.91383 0.86482 0.84827 0.91851 0.84439 0.88111 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.82 10.96 127.77 1.40 3.22 15 2 N -0.62 -16.59 3.33 -842.91 -2.81 -19.39 15 3 C 0.10 2.00 7.35 86.83 0.64 2.64 15 4 C -0.11 -2.41 6.51 31.65 0.21 -2.20 15 5 C -0.11 -3.91 3.43 -11.55 -0.04 -3.95 15 6 H 0.15 4.49 8.14 -2.39 -0.02 4.47 15 7 C 0.42 20.54 7.24 71.24 0.52 21.06 15 8 O -0.55 -28.99 14.70 20.78 0.31 -28.69 15 9 O -0.26 -14.73 8.57 14.87 0.13 -14.61 15 10 C -0.41 -26.13 10.10 67.94 0.69 -25.44 15 11 H 0.07 4.78 7.09 -2.91 -0.02 4.76 15 12 C 0.03 1.58 5.49 84.87 0.47 2.04 15 13 N -0.91 -56.03 13.96 21.63 0.30 -55.73 15 14 Si 0.97 47.76 28.62 68.60 1.96 49.72 15 15 H -0.27 -13.11 7.11 99.48 0.71 -12.41 15 16 H -0.25 -11.20 7.11 99.48 0.71 -10.49 15 17 H -0.26 -12.84 7.11 99.48 0.71 -12.13 15 18 C 0.52 18.91 7.33 87.90 0.64 19.55 15 19 O -0.56 -25.33 17.59 -3.02 -0.05 -25.39 15 20 H 0.05 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.07 1.49 7.93 -2.39 -0.02 1.47 15 22 H 0.12 1.28 8.14 -2.39 -0.02 1.26 15 23 H 0.13 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.14 1.79 8.14 -2.38 -0.02 1.77 15 26 H 0.10 2.53 6.93 -2.39 -0.02 2.52 15 27 H 0.29 16.20 8.31 -92.71 -0.77 15.43 15 Total: -1.00 -82.15 245.61 5.53 -76.62 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: 1.18 Total: 0.54 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 4.52 Total: 16.92 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.51 Total: -75.13 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: 0.38 Total: -68.68 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.96 Total: 49.72 kcal Total: -82.15 5.53 -76.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343208.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.392 kcal (2) G-P(sol) polarization free energy of solvation -82.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds