Wall clock time and date at job start Sun Mar 29 2020 21:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46761 * 124.34967 * 2 1 4 4 C 1.54485 * 105.47391 * 162.98048 * 3 2 1 5 5 C 1.54636 * 101.76198 * 25.41748 * 4 3 2 6 6 H 1.09006 * 110.48556 * 94.01293 * 5 4 3 7 7 C 1.50703 * 110.48535 * 216.52094 * 5 4 3 8 8 O 1.21213 * 119.99683 * 0.02562 * 7 5 4 9 9 O 1.34304 * 119.99842 * 180.02562 * 7 5 4 10 10 C 1.34921 * 117.00180 * 180.02562 * 9 7 5 11 11 H 1.08004 * 119.99263 * 359.97438 * 10 9 7 12 12 C 1.38745 * 120.00380 * 179.97438 * 10 9 7 13 13 N 1.31449 * 120.00198 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99963 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00262 * 14 12 10 16 16 H 1.48494 * 109.46800 * 30.00310 * 14 12 10 17 17 H 1.48504 * 109.46913 * 150.00012 * 14 12 10 18 18 C 1.34427 * 124.34988 * 179.97438 * 2 1 3 19 19 O 1.21282 * 124.94118 * 0.44665 * 18 2 1 20 20 H 1.09000 * 109.46704 * 89.99827 * 1 2 3 21 21 H 1.08997 * 109.47134 * 209.99287 * 1 2 3 22 22 H 1.08994 * 109.46874 * 330.00127 * 1 2 3 23 23 H 1.08999 * 110.24766 * 43.98566 * 3 2 1 24 24 H 1.08997 * 110.32129 * 282.02107 * 3 2 1 25 25 H 1.08996 * 110.97551 * 267.30142 * 4 3 2 26 26 H 1.08996 * 111.00314 * 143.54639 * 4 3 2 27 27 H 0.97001 * 119.99860 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 0.4358 5 6 3.6898 -0.7379 0.0102 6 1 4.1216 -0.8534 -0.9840 7 6 4.4403 -1.5787 1.0107 8 8 4.9452 -1.0583 1.9820 9 8 4.5497 -2.9044 0.8259 10 6 5.2339 -3.5985 1.7590 11 1 5.6642 -3.0850 2.6061 12 6 5.3847 -4.9717 1.6302 13 7 6.0517 -5.6478 2.5389 14 14 4.6397 -5.8598 0.1653 15 1 3.2589 -6.2927 0.4987 16 1 4.6028 -4.9434 -1.0026 17 1 5.4654 -7.0492 -0.1647 18 6 2.2235 -1.1098 0.0005 19 8 1.7946 -2.2443 -0.0067 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3633 0.8900 0.5138 23 1 1.8984 1.9383 0.7102 24 1 2.3309 1.6443 -0.9997 25 1 3.8269 0.8447 1.5142 26 1 4.4758 1.3008 -0.0960 27 1 6.1568 -6.6079 2.4490 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306343211.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:40 Heat of formation + Delta-G solvation = -103.364767 kcal Electronic energy + Delta-G solvation = -14370.966581 eV Core-core repulsion = 11708.786572 eV Total energy + Delta-G solvation = -2662.180009 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.53325 -38.72784 -36.31280 -35.30065 -32.67319 -32.22400 -28.19758 -26.74340 -25.32234 -22.38051 -20.35300 -19.12443 -17.91991 -17.13903 -16.63773 -16.14601 -15.26750 -14.70679 -14.37998 -13.84197 -13.56336 -13.22494 -12.90625 -12.49634 -12.44051 -12.19160 -12.03364 -11.58274 -11.16881 -10.95784 -10.41434 -10.27920 -9.67630 -9.58830 -9.17893 -8.69117 -8.60717 -6.32260 -4.07019 2.64284 2.97325 3.23500 3.35221 3.48049 3.51750 4.06732 4.35701 4.44307 4.58097 5.02432 5.04041 5.16487 5.23718 5.36001 5.40545 5.55745 5.67223 5.89356 6.18658 6.37186 6.53874 7.09718 7.75855 8.07846 8.32760 8.61073 9.06495 9.72863 10.75491 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.042600 B = 0.009950 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.119468 B = 2813.379806 C = 3254.553502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.630 5.630 3 C 0.105 3.895 4 C -0.118 4.118 5 C -0.112 4.112 6 H 0.133 0.867 7 C 0.421 3.579 8 O -0.537 6.537 9 O -0.231 6.231 10 C -0.380 4.380 11 H 0.110 0.890 12 C 0.069 3.931 13 N -0.873 5.873 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.259 1.259 17 H -0.283 1.283 18 C 0.526 3.474 19 O -0.501 6.501 20 H 0.054 0.946 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 13.293 -7.916 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.366 5.366 3 C -0.018 4.018 4 C -0.156 4.156 5 C -0.135 4.135 6 H 0.150 0.850 7 C 0.266 3.734 8 O -0.432 6.432 9 O -0.138 6.138 10 C -0.456 4.456 11 H 0.127 0.873 12 C -0.135 4.135 13 N -0.512 5.512 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.183 1.183 17 H -0.209 1.209 18 C 0.312 3.688 19 O -0.374 6.374 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.789 12.565 -7.605 17.116 hybrid contribution -0.265 -0.424 -0.546 0.741 sum -9.054 12.141 -8.151 17.200 Atomic orbital electron populations 1.21506 0.78038 1.03112 1.01623 1.48120 1.06397 1.07290 1.74837 1.22130 0.90699 0.87302 1.01654 1.22630 0.95984 0.92054 1.04909 1.21600 0.94265 0.96006 1.01619 0.84965 1.21920 0.82408 0.82749 0.86372 1.90587 1.48569 1.73175 1.30915 1.83571 1.63338 1.18414 1.48521 1.20681 1.31129 0.90414 1.03355 0.87263 1.24532 0.95674 0.95208 0.98106 1.69617 1.38900 1.08669 1.34019 0.86185 0.79212 0.78756 0.82700 1.19647 1.18279 1.20921 1.20400 0.88066 0.84566 0.75753 1.90791 1.77823 1.20713 1.48042 0.92753 0.90666 0.91149 0.90187 0.91005 0.87899 0.88609 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 10.96 59.85 0.66 1.71 15 2 N -0.63 -8.65 3.33 -180.29 -0.60 -9.25 15 3 C 0.11 1.06 7.35 -3.12 -0.02 1.03 15 4 C -0.12 -1.52 6.48 -25.09 -0.16 -1.69 15 5 C -0.11 -2.00 3.44 -91.78 -0.32 -2.31 15 6 H 0.13 2.00 8.14 -51.93 -0.42 1.58 15 7 C 0.42 10.36 7.16 36.01 0.26 10.62 15 8 O -0.54 -14.30 14.73 -19.05 -0.28 -14.58 15 9 O -0.23 -6.59 8.32 -21.57 -0.18 -6.77 15 10 C -0.38 -11.88 10.10 30.92 0.31 -11.56 15 11 H 0.11 3.68 7.09 -52.48 -0.37 3.31 15 12 C 0.07 2.08 5.49 -17.53 -0.10 1.98 15 13 N -0.87 -26.75 13.96 55.48 0.77 -25.97 15 14 Si 0.91 23.24 28.62 -169.99 -4.86 18.38 15 15 H -0.27 -6.96 7.11 56.52 0.40 -6.56 15 16 H -0.26 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 18 C 0.53 9.86 7.44 -10.86 -0.08 9.78 15 19 O -0.50 -11.67 17.21 5.55 0.10 -11.57 15 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.07 0.92 7.93 -51.93 -0.41 0.51 15 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.08 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 15 25 H 0.10 1.54 7.00 -51.93 -0.36 1.17 15 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 15 27 H 0.28 7.82 8.31 -40.82 -0.34 7.48 15 LS Contribution 245.07 15.07 3.69 3.69 Total: -1.00 -36.95 245.07 -3.63 -40.59 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -2.82 Total: -4.07 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 0.55 Total: 9.56 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.17 Total: -35.23 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.36 Total: -32.92 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.86 Total: 18.38 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -36.95 -3.63 -40.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343211.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.779 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds