Wall clock time and date at job start Sun Mar 29 2020 21:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46761 * 124.34967 * 2 1 4 4 C 1.54485 * 105.47391 * 162.98048 * 3 2 1 5 5 C 1.54636 * 101.76198 * 25.41748 * 4 3 2 6 6 H 1.09006 * 110.48556 * 94.01293 * 5 4 3 7 7 C 1.50703 * 110.48535 * 216.52094 * 5 4 3 8 8 O 1.21213 * 119.99683 * 0.02562 * 7 5 4 9 9 O 1.34304 * 119.99842 * 180.02562 * 7 5 4 10 10 C 1.34921 * 117.00180 * 180.02562 * 9 7 5 11 11 H 1.08004 * 119.99263 * 359.97438 * 10 9 7 12 12 C 1.38745 * 120.00380 * 179.97438 * 10 9 7 13 13 N 1.31449 * 120.00198 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99963 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00262 * 14 12 10 16 16 H 1.48494 * 109.46800 * 30.00310 * 14 12 10 17 17 H 1.48504 * 109.46913 * 150.00012 * 14 12 10 18 18 C 1.34427 * 124.34988 * 179.97438 * 2 1 3 19 19 O 1.21282 * 124.94118 * 0.44665 * 18 2 1 20 20 H 1.09000 * 109.46704 * 89.99827 * 1 2 3 21 21 H 1.08997 * 109.47134 * 209.99287 * 1 2 3 22 22 H 1.08994 * 109.46874 * 330.00127 * 1 2 3 23 23 H 1.08999 * 110.24766 * 43.98566 * 3 2 1 24 24 H 1.08997 * 110.32129 * 282.02107 * 3 2 1 25 25 H 1.08996 * 110.97551 * 267.30142 * 4 3 2 26 26 H 1.08996 * 111.00314 * 143.54639 * 4 3 2 27 27 H 0.97001 * 119.99860 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 0.4358 5 6 3.6898 -0.7379 0.0102 6 1 4.1216 -0.8534 -0.9840 7 6 4.4403 -1.5787 1.0107 8 8 4.9452 -1.0583 1.9820 9 8 4.5497 -2.9044 0.8259 10 6 5.2339 -3.5985 1.7590 11 1 5.6642 -3.0850 2.6061 12 6 5.3847 -4.9717 1.6302 13 7 6.0517 -5.6478 2.5389 14 14 4.6397 -5.8598 0.1653 15 1 3.2589 -6.2927 0.4987 16 1 4.6028 -4.9434 -1.0026 17 1 5.4654 -7.0492 -0.1647 18 6 2.2235 -1.1098 0.0005 19 8 1.7946 -2.2443 -0.0067 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3633 0.8900 0.5138 23 1 1.8984 1.9383 0.7102 24 1 2.3309 1.6443 -0.9997 25 1 3.8269 0.8447 1.5142 26 1 4.4758 1.3008 -0.0960 27 1 6.1568 -6.6079 2.4490 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306343211.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:39 Heat of formation + Delta-G solvation = -131.459859 kcal Electronic energy + Delta-G solvation = -14372.184876 eV Core-core repulsion = 11708.786572 eV Total energy + Delta-G solvation = -2663.398304 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.01701 -40.59762 -37.86903 -37.19782 -34.57007 -33.85445 -29.52509 -27.86016 -27.30465 -23.79020 -21.83618 -20.67265 -20.20112 -18.83925 -17.96299 -17.64198 -16.92539 -16.43186 -16.09721 -15.60605 -14.81455 -14.69303 -14.56153 -14.21058 -13.74318 -13.47752 -13.33148 -13.12362 -12.71356 -12.46709 -12.35590 -12.01786 -11.89928 -11.33569 -10.94692 -10.88499 -9.75285 -8.61337 -6.46286 1.05209 1.25017 1.33514 1.49867 1.50104 2.01635 2.23456 2.39320 2.85083 3.23508 3.41919 3.92464 4.02042 4.32959 4.37846 4.45896 4.66245 4.72699 4.87230 4.98120 5.16890 5.41350 5.52998 5.83342 5.93276 6.42306 6.76327 7.00867 7.52436 8.51332 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.042600 B = 0.009950 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.119468 B = 2813.379806 C = 3254.553502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.618 5.618 3 C 0.108 3.892 4 C -0.112 4.112 5 C -0.113 4.113 6 H 0.163 0.837 7 C 0.419 3.581 8 O -0.563 6.563 9 O -0.249 6.249 10 C -0.409 4.409 11 H 0.064 0.936 12 C 0.024 3.976 13 N -0.910 5.910 14 Si 0.976 3.024 15 H -0.272 1.272 16 H -0.257 1.257 17 H -0.254 1.254 18 C 0.512 3.488 19 O -0.562 6.562 20 H 0.074 0.926 21 H 0.050 0.950 22 H 0.109 0.891 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 15.285 -10.197 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.352 5.352 3 C -0.013 4.013 4 C -0.149 4.149 5 C -0.135 4.135 6 H 0.180 0.820 7 C 0.265 3.735 8 O -0.459 6.459 9 O -0.157 6.157 10 C -0.484 4.484 11 H 0.082 0.918 12 C -0.177 4.177 13 N -0.550 5.550 14 Si 0.796 3.204 15 H -0.197 1.197 16 H -0.181 1.181 17 H -0.178 1.178 18 C 0.298 3.702 19 O -0.441 6.441 20 H 0.093 0.907 21 H 0.069 0.931 22 H 0.127 0.873 23 H 0.130 0.870 24 H 0.133 0.867 25 H 0.096 0.904 26 H 0.151 0.849 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.150 14.639 -9.869 20.365 hybrid contribution 0.138 -0.823 0.244 0.869 sum -10.013 13.816 -9.625 19.591 Atomic orbital electron populations 1.21784 0.76041 1.03858 1.03227 1.48302 1.07790 1.07033 1.72095 1.22493 0.87836 0.85995 1.04983 1.22768 0.99539 0.88736 1.03902 1.21900 0.93280 0.97336 1.00962 0.81986 1.23472 0.81017 0.81947 0.87023 1.90564 1.49366 1.73409 1.32517 1.83606 1.63907 1.20353 1.47880 1.20395 1.33067 0.91394 1.03585 0.91840 1.25427 0.95677 0.95472 1.01140 1.69685 1.39786 1.09668 1.35813 0.85187 0.78409 0.78151 0.78606 1.19707 1.18114 1.17759 1.20590 0.88750 0.84921 0.75894 1.90752 1.78717 1.23227 1.51365 0.90717 0.93079 0.87253 0.87003 0.86722 0.90431 0.84873 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 10.96 127.77 1.40 3.05 15 2 N -0.62 -14.93 3.33 -842.91 -2.81 -17.74 15 3 C 0.11 1.59 7.35 86.83 0.64 2.23 15 4 C -0.11 -2.51 6.48 31.66 0.21 -2.30 15 5 C -0.11 -3.83 3.44 -11.55 -0.04 -3.87 15 6 H 0.16 4.48 8.14 -2.38 -0.02 4.46 15 7 C 0.42 21.09 7.16 71.24 0.51 21.60 15 8 O -0.56 -31.05 14.73 20.76 0.31 -30.74 15 9 O -0.25 -14.65 8.32 15.77 0.13 -14.52 15 10 C -0.41 -26.77 10.10 67.94 0.69 -26.09 15 11 H 0.06 4.60 7.09 -2.91 -0.02 4.58 15 12 C 0.02 1.47 5.49 84.87 0.47 1.93 15 13 N -0.91 -57.24 13.96 21.62 0.30 -56.94 15 14 Si 0.98 48.48 28.62 68.60 1.96 50.44 15 15 H -0.27 -13.45 7.11 99.48 0.71 -12.74 15 16 H -0.26 -12.60 7.11 99.48 0.71 -11.90 15 17 H -0.25 -11.26 7.11 99.48 0.71 -10.56 15 18 C 0.51 18.60 7.44 87.89 0.65 19.26 15 19 O -0.56 -26.54 17.21 -3.03 -0.05 -26.60 15 20 H 0.07 1.09 8.14 -2.39 -0.02 1.08 15 21 H 0.05 1.19 7.93 -2.39 -0.02 1.17 15 22 H 0.11 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.11 1.08 8.14 -2.39 -0.02 1.06 15 24 H 0.11 0.90 8.14 -2.39 -0.02 0.89 15 25 H 0.08 2.18 7.00 -2.39 -0.02 2.16 15 26 H 0.13 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.29 16.45 8.31 -92.71 -0.77 15.68 15 Total: -1.00 -86.82 245.07 5.54 -81.28 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: 1.18 Total: -1.00 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 4.52 Total: 15.81 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.51 Total: -74.68 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: 0.38 Total: -71.86 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.96 Total: 50.44 kcal Total: -86.82 5.54 -81.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343211.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.177 kcal (2) G-P(sol) polarization free energy of solvation -86.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds