Wall clock time and date at job start Sun Mar 29 2020 22:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 H 1.08999 * 110.78170 * 308.24051 * 3 2 1 5 5 C 1.54383 * 110.75708 * 71.48416 * 3 2 1 6 6 N 1.47016 * 107.28804 * 140.50279 * 5 3 2 7 7 C 1.34774 * 125.64624 * 181.12559 * 6 5 3 8 8 O 1.21681 * 120.00383 * 359.97438 * 7 6 5 9 9 C 1.46380 * 120.00045 * 179.97438 * 7 6 5 10 10 H 1.08004 * 119.99633 * 0.02562 * 9 7 6 11 11 C 1.40044 * 120.00270 * 180.02562 * 9 7 6 12 12 N 1.30676 * 119.99981 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00210 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.46963 * 90.00143 * 13 11 9 15 15 H 1.48497 * 109.47496 * 210.00081 * 13 11 9 16 16 H 1.48498 * 109.47140 * 330.00615 * 13 11 9 17 17 C 1.47423 * 108.70440 * 1.09781 * 6 5 3 18 18 C 1.54909 * 104.83351 * 335.86643 * 17 6 5 19 19 H 1.09002 * 111.00594 * 155.08642 * 18 17 6 20 20 O 1.42900 * 111.00614 * 278.90217 * 18 17 6 21 21 H 1.08996 * 109.46966 * 59.99640 * 1 2 3 22 22 H 1.08999 * 109.46701 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46917 * 299.99711 * 1 2 3 24 24 H 1.08996 * 109.47404 * 240.00226 * 2 1 3 25 25 H 1.09005 * 109.47092 * 119.99759 * 2 1 3 26 26 H 1.09000 * 109.83755 * 21.09728 * 5 3 2 27 27 H 1.08996 * 110.02988 * 260.01813 * 5 3 2 28 28 H 0.96996 * 119.99927 * 180.02562 * 12 11 9 29 29 H 1.09000 * 110.36544 * 217.03065 * 17 6 5 30 30 H 1.09002 * 110.46474 * 94.75414 * 17 6 5 31 31 H 0.96704 * 113.99874 * 295.41307 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5742 2.0174 -0.8004 5 6 1.7901 2.1112 1.3689 6 7 2.9702 2.9326 1.6758 7 6 3.1506 3.6609 2.7953 8 8 2.2922 3.6740 3.6576 9 6 4.3793 4.4362 2.9740 10 1 5.1410 4.4249 2.2085 11 6 4.5670 5.1926 4.1376 12 7 3.6455 5.2059 5.0641 13 14 6.1352 6.1815 4.3659 14 1 5.9464 7.5448 3.8081 15 1 6.4530 6.2786 5.8132 16 1 7.2530 5.5074 3.6578 17 6 3.9237 2.8271 0.5564 18 6 3.5860 1.4782 -0.1265 19 1 3.8925 1.4824 -1.1725 20 8 4.1826 0.3855 0.5749 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6606 1.3473 2.1356 27 1 0.9022 2.7414 1.3200 28 1 3.7754 5.7300 5.8698 29 1 4.9477 2.8172 0.9300 30 1 3.7837 3.6517 -0.1425 31 1 5.1496 0.3928 0.5652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306362551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:18 Heat of formation + Delta-G solvation = -94.618090 kcal Electronic energy + Delta-G solvation = -14651.116894 eV Core-core repulsion = 12125.149264 eV Total energy + Delta-G solvation = -2525.967631 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.07054 -36.44334 -34.68082 -33.17889 -32.42433 -28.89658 -27.72100 -26.04852 -23.49007 -21.58845 -19.93724 -19.00033 -17.39413 -16.25277 -15.58950 -14.95105 -14.55983 -14.21152 -13.77790 -13.35903 -13.20268 -12.46971 -12.34358 -11.99596 -11.76070 -11.34210 -11.22207 -11.09778 -10.93261 -10.63252 -10.49456 -10.27758 -10.17918 -10.00954 -9.68730 -8.84735 -7.60915 -7.13098 -6.18828 -4.63649 3.13538 3.19902 3.23361 4.08491 4.42824 4.57780 4.61567 4.93297 5.05585 5.12017 5.45089 5.49883 5.70580 5.76840 5.86152 5.89853 6.06593 6.18349 6.25153 6.32550 6.41234 6.55777 6.60679 6.77498 7.40369 7.43562 7.93627 8.11915 8.43281 9.02217 9.52224 10.59476 10.78564 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049401 B = 0.008319 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.657066 B = 3365.177390 C = 3746.903193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C -0.094 4.094 4 H 0.086 0.914 5 C 0.127 3.873 6 N -0.640 5.640 7 C 0.572 3.428 8 O -0.576 6.576 9 C -0.540 4.540 10 H 0.068 0.932 11 C 0.086 3.914 12 N -0.768 5.768 13 Si 0.909 3.091 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.265 1.265 17 C 0.089 3.911 18 C 0.089 3.911 19 H 0.065 0.935 20 O -0.553 6.553 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.269 0.731 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -6.524 -11.226 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 C -0.113 4.113 4 H 0.104 0.896 5 C 0.003 3.997 6 N -0.380 5.380 7 C 0.378 3.622 8 O -0.459 6.459 9 C -0.577 4.577 10 H 0.086 0.914 11 C -0.133 4.133 12 N -0.397 5.397 13 Si 0.733 3.267 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.189 1.189 17 C -0.036 4.036 18 C 0.029 3.971 19 H 0.083 0.917 20 O -0.358 6.358 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.112 -6.543 -10.351 12.246 hybrid contribution 1.406 0.743 -0.091 1.593 sum 1.294 -5.800 -10.442 12.015 Atomic orbital electron populations 1.21833 0.96273 1.01189 1.01887 1.21288 0.94926 0.95271 1.02488 1.22373 0.93334 0.97094 0.98458 0.89586 1.21561 0.90338 0.93835 0.94012 1.48607 1.17897 1.51429 1.20085 1.18026 0.88022 0.78108 0.78028 1.90606 1.46408 1.67106 1.41741 1.20874 1.02619 1.29419 1.04752 0.91387 1.25735 0.97007 0.95564 0.95023 1.70026 1.31860 1.31933 1.05902 0.86360 0.82158 0.80193 0.77962 1.19718 1.20397 1.18933 1.22593 0.95515 0.95325 0.90161 1.23022 0.93810 0.86516 0.93718 0.91725 1.86490 1.24198 1.47200 1.77888 0.93081 0.93082 0.92381 0.92323 0.90988 0.93014 0.93611 0.92063 0.90974 0.92859 0.77835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.80 37.16 0.36 -1.52 16 2 C -0.10 -1.40 4.82 -26.73 -0.13 -1.53 16 3 C -0.09 -1.45 2.86 -88.75 -0.25 -1.70 16 4 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.13 2.63 5.87 -3.04 -0.02 2.61 16 6 N -0.64 -15.42 3.33 -172.15 -0.57 -15.99 16 7 C 0.57 17.09 7.78 -12.99 -0.10 16.99 16 8 O -0.58 -19.59 15.35 5.21 0.08 -19.51 16 9 C -0.54 -15.60 8.98 -35.63 -0.32 -15.92 16 10 H 0.07 1.79 6.64 -52.48 -0.35 1.44 16 11 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 12 N -0.77 -23.53 11.83 55.55 0.66 -22.87 16 13 Si 0.91 20.32 29.56 -169.99 -5.02 15.30 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 17 C 0.09 1.66 6.26 -2.53 -0.02 1.64 16 18 C 0.09 1.33 4.16 -24.58 -0.10 1.23 16 19 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 20 O -0.55 -8.46 12.33 -35.23 -0.43 -8.89 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.13 7.52 -51.93 -0.39 0.74 16 26 H 0.05 1.16 7.68 -51.93 -0.40 0.76 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.27 7.42 8.29 -40.82 -0.34 7.09 16 29 H 0.07 1.35 7.14 -51.93 -0.37 0.97 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.37 4.22 9.12 45.56 0.42 4.63 16 LS Contribution 260.82 15.07 3.93 3.93 Total: -1.00 -36.05 260.82 -5.62 -41.67 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -3.59 Total: 2.20 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.67 Total: 4.16 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.08 Total: -38.86 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.35 Total: -28.41 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -36.05 -5.62 -41.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.944 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds