Wall clock time and date at job start Sun Mar 29 2020 22:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 H 1.08999 * 110.78170 * 308.24051 * 3 2 1 5 5 C 1.54383 * 110.75708 * 71.48416 * 3 2 1 6 6 N 1.47016 * 107.28804 * 140.50279 * 5 3 2 7 7 C 1.34774 * 125.64624 * 181.12559 * 6 5 3 8 8 O 1.21681 * 120.00383 * 359.97438 * 7 6 5 9 9 C 1.46380 * 120.00045 * 179.97438 * 7 6 5 10 10 H 1.08004 * 119.99633 * 0.02562 * 9 7 6 11 11 C 1.40044 * 120.00270 * 180.02562 * 9 7 6 12 12 N 1.30676 * 119.99981 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00210 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.46963 * 90.00143 * 13 11 9 15 15 H 1.48497 * 109.47496 * 210.00081 * 13 11 9 16 16 H 1.48498 * 109.47140 * 330.00615 * 13 11 9 17 17 C 1.47423 * 108.70440 * 1.09781 * 6 5 3 18 18 C 1.54909 * 104.83351 * 335.86643 * 17 6 5 19 19 H 1.09002 * 111.00594 * 155.08642 * 18 17 6 20 20 O 1.42900 * 111.00614 * 278.90217 * 18 17 6 21 21 H 1.08996 * 109.46966 * 59.99640 * 1 2 3 22 22 H 1.08999 * 109.46701 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46917 * 299.99711 * 1 2 3 24 24 H 1.08996 * 109.47404 * 240.00226 * 2 1 3 25 25 H 1.09005 * 109.47092 * 119.99759 * 2 1 3 26 26 H 1.09000 * 109.83755 * 21.09728 * 5 3 2 27 27 H 1.08996 * 110.02988 * 260.01813 * 5 3 2 28 28 H 0.96996 * 119.99927 * 180.02562 * 12 11 9 29 29 H 1.09000 * 110.36544 * 217.03065 * 17 6 5 30 30 H 1.09002 * 110.46474 * 94.75414 * 17 6 5 31 31 H 0.96704 * 113.99874 * 295.41307 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5742 2.0174 -0.8004 5 6 1.7901 2.1112 1.3689 6 7 2.9702 2.9326 1.6758 7 6 3.1506 3.6609 2.7953 8 8 2.2922 3.6740 3.6576 9 6 4.3793 4.4362 2.9740 10 1 5.1410 4.4249 2.2085 11 6 4.5670 5.1926 4.1376 12 7 3.6455 5.2059 5.0641 13 14 6.1352 6.1815 4.3659 14 1 5.9464 7.5448 3.8081 15 1 6.4530 6.2786 5.8132 16 1 7.2530 5.5074 3.6578 17 6 3.9237 2.8271 0.5564 18 6 3.5860 1.4782 -0.1265 19 1 3.8925 1.4824 -1.1725 20 8 4.1826 0.3855 0.5749 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6606 1.3473 2.1356 27 1 0.9022 2.7414 1.3200 28 1 3.7754 5.7300 5.8698 29 1 4.9477 2.8172 0.9300 30 1 3.7837 3.6517 -0.1425 31 1 5.1496 0.3928 0.5652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306362551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:18 Heat of formation + Delta-G solvation = -123.617148 kcal Electronic energy + Delta-G solvation = -14652.374388 eV Core-core repulsion = 12125.149264 eV Total energy + Delta-G solvation = -2527.225124 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61772 -38.41344 -36.03043 -34.77331 -34.54261 -30.43300 -29.33528 -27.97065 -25.06076 -22.90352 -21.55070 -20.65311 -18.97860 -17.88137 -17.69569 -16.45625 -16.28234 -15.52943 -15.47512 -14.89127 -14.64437 -14.05729 -13.89981 -13.55455 -13.12123 -13.03622 -13.00145 -12.69678 -12.65042 -12.35620 -12.02855 -11.79102 -11.61811 -11.24533 -10.96923 -10.93773 -9.89754 -9.10214 -8.32934 -6.89235 1.37560 1.40099 1.55616 2.21514 2.41703 2.85516 3.30256 3.53381 3.67339 3.74483 3.95372 4.32848 4.37486 4.50384 4.61287 4.68629 4.77348 4.87421 4.94954 5.06947 5.14924 5.19285 5.28831 5.39767 5.53694 5.61617 6.00406 6.37826 6.82358 6.97430 7.45255 8.42053 8.63898 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049401 B = 0.008319 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.657066 B = 3365.177390 C = 3746.903193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.084 4.084 4 H 0.114 0.886 5 C 0.123 3.877 6 N -0.650 5.650 7 C 0.548 3.452 8 O -0.638 6.638 9 C -0.564 4.564 10 H 0.090 0.910 11 C 0.024 3.976 12 N -0.825 5.825 13 Si 1.003 2.997 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.245 1.245 17 C 0.078 3.922 18 C 0.103 3.897 19 H 0.118 0.882 20 O -0.571 6.571 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.034 0.966 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.021 0.979 27 H 0.030 0.970 28 H 0.275 0.725 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -6.663 -13.875 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.133 4.133 3 C -0.103 4.103 4 H 0.132 0.868 5 C -0.001 4.001 6 N -0.387 5.387 7 C 0.355 3.645 8 O -0.526 6.526 9 C -0.600 4.600 10 H 0.108 0.892 11 C -0.190 4.190 12 N -0.455 5.455 13 Si 0.821 3.179 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.168 1.168 17 C -0.045 4.045 18 C 0.043 3.957 19 H 0.135 0.865 20 O -0.379 6.379 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.863 -6.722 -13.077 14.821 hybrid contribution 0.749 0.732 0.709 1.265 sum 2.612 -5.989 -12.368 13.988 Atomic orbital electron populations 1.21827 0.95340 1.02200 1.01670 1.21240 0.95750 0.93847 1.02476 1.22439 0.94582 0.97936 0.95298 0.86760 1.21707 0.88952 0.92689 0.96773 1.48463 1.20024 1.50217 1.20035 1.18527 0.88096 0.78913 0.78985 1.90540 1.48180 1.69388 1.44506 1.21393 1.02904 1.29745 1.05983 0.89183 1.27108 1.01462 0.96445 0.94011 1.70215 1.35089 1.33290 1.06902 0.84953 0.76391 0.78222 0.78297 1.18372 1.19763 1.16850 1.22989 0.94093 0.98642 0.88812 1.23076 0.92992 0.83993 0.95594 0.86475 1.86468 1.26024 1.47055 1.78384 0.91164 0.91537 0.94709 0.89514 0.93632 0.96093 0.95177 0.91502 0.91265 0.91091 0.75781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.80 71.98 0.71 -2.76 16 2 C -0.10 -2.40 4.82 30.60 0.15 -2.26 16 3 C -0.08 -2.40 2.86 -9.58 -0.03 -2.43 16 4 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 5 C 0.12 5.24 5.87 86.75 0.51 5.75 16 6 N -0.65 -31.95 3.33 -816.78 -2.72 -34.67 16 7 C 0.55 34.13 7.78 86.36 0.67 34.80 16 8 O -0.64 -46.11 15.35 -4.29 -0.07 -46.18 16 9 C -0.56 -33.08 8.98 24.83 0.22 -32.86 16 10 H 0.09 4.68 6.64 -2.91 -0.02 4.66 16 11 C 0.02 1.39 5.50 85.30 0.47 1.86 16 12 N -0.83 -52.37 11.83 21.83 0.26 -52.11 16 13 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 14 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 15 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 16 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 17 C 0.08 2.76 6.26 86.86 0.54 3.30 16 18 C 0.10 2.71 4.16 31.99 0.13 2.85 16 19 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 20 O -0.57 -16.07 12.33 -148.98 -1.84 -17.91 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.03 0.93 7.69 -2.38 -0.02 0.91 16 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.04 1.39 7.52 -2.38 -0.02 1.38 16 26 H 0.02 1.00 7.68 -2.39 -0.02 0.98 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.28 15.72 8.29 -92.71 -0.77 14.95 16 29 H 0.07 2.47 7.14 -2.39 -0.02 2.45 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.39 7.74 9.12 -74.05 -0.68 7.07 16 Total: -1.00 -83.82 260.82 1.49 -82.33 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.45 Total: 16.78 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 3.38 Total: 8.27 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -2.46 Total: -86.79 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: -1.90 Total: -64.08 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -83.82 1.49 -82.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.287 kcal (2) G-P(sol) polarization free energy of solvation -83.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds