Wall clock time and date at job start Sun Mar 29 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.46978 * 2 1 4 4 H 1.09000 * 110.78437 * 56.79192 * 3 2 1 5 5 C 1.54325 * 110.72304 * 293.54583 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52316 * 5 3 2 7 7 C 1.34775 * 125.64993 * 178.90064 * 6 5 3 8 8 O 1.21689 * 119.99882 * 359.97438 * 7 6 5 9 9 C 1.46379 * 120.00340 * 180.02562 * 7 6 5 10 10 H 1.07997 * 119.99823 * 0.02562 * 9 7 6 11 11 C 1.40050 * 120.00048 * 179.97438 * 9 7 6 12 12 N 1.30668 * 119.99996 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99820 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47281 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47017 * 120.00355 * 13 11 9 16 16 H 1.48500 * 109.47364 * 240.00623 * 13 11 9 17 17 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 18 18 C 1.54914 * 104.82992 * 24.12623 * 17 6 5 19 19 H 1.09001 * 111.00161 * 204.91727 * 18 17 6 20 20 O 1.42894 * 111.00174 * 81.10645 * 18 17 6 21 21 H 1.09003 * 109.47054 * 299.99653 * 1 2 3 22 22 H 1.08997 * 109.47291 * 59.99539 * 1 2 3 23 23 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46941 * 239.99846 * 2 1 3 25 25 H 1.08997 * 109.47291 * 120.00461 * 2 1 3 26 26 H 1.09002 * 109.88192 * 100.02756 * 5 3 2 27 27 H 1.09000 * 109.88128 * 339.01609 * 5 3 2 28 28 H 0.97001 * 120.00031 * 179.97438 * 12 11 9 29 29 H 1.08999 * 110.36956 * 142.96999 * 17 6 5 30 30 H 1.09003 * 110.36599 * 265.28903 * 17 6 5 31 31 H 0.96704 * 114.00274 * 61.45368 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6426 1.9932 0.8526 5 6 1.6783 2.1495 -1.3232 6 7 2.8284 2.9814 -1.7059 7 6 2.9136 3.7413 -2.8157 8 8 1.9854 3.7763 -3.6019 9 6 4.1231 4.5237 -3.0761 10 1 4.9473 4.4917 -2.3790 11 6 4.2117 5.3129 -4.2297 12 7 3.2146 5.3512 -5.0733 13 14 5.7549 6.3119 -4.5615 14 1 6.7294 6.0974 -3.4618 15 1 6.3576 5.8791 -5.8478 16 1 5.4046 7.7529 -4.6390 17 6 3.8729 2.8475 -0.6741 18 6 3.5935 1.4799 -0.0022 19 1 3.9870 1.4563 1.0140 20 8 4.1288 0.4079 -0.7808 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.7984 2.7768 -1.1799 27 1 1.4828 1.4083 -2.0982 28 1 3.2759 5.8981 -5.8721 29 1 4.8618 2.8499 -1.1327 30 1 3.7905 3.6527 0.0559 31 1 5.0887 0.4438 -0.8922 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306362552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:20 Heat of formation + Delta-G solvation = -123.609084 kcal Electronic energy + Delta-G solvation = -14661.111234 eV Core-core repulsion = 12133.886459 eV Total energy + Delta-G solvation = -2527.224774 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.61814 -38.41054 -36.03211 -34.77567 -34.54413 -30.42408 -29.32147 -27.96201 -25.10483 -22.90676 -21.55826 -20.60990 -18.97379 -17.87265 -17.70271 -16.48289 -16.28089 -15.55715 -15.47474 -14.86156 -14.65405 -14.06327 -13.85822 -13.56564 -13.15269 -13.02330 -12.99883 -12.72093 -12.67590 -12.38035 -11.98509 -11.78344 -11.58186 -11.25399 -10.98586 -10.93583 -9.89446 -9.10479 -8.33163 -6.89258 1.37733 1.38650 1.56871 2.21370 2.41620 2.85303 3.29910 3.53124 3.66774 3.74912 3.95505 4.32534 4.37132 4.50737 4.60865 4.69142 4.76930 4.86931 4.94506 5.06853 5.14226 5.18886 5.29078 5.40393 5.53925 5.61689 6.00550 6.37835 6.82398 6.96446 7.45127 8.41997 8.63872 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049019 B = 0.008364 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.069913 B = 3346.865482 C = 3733.574643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.084 4.084 4 H 0.114 0.886 5 C 0.123 3.877 6 N -0.650 5.650 7 C 0.548 3.452 8 O -0.638 6.638 9 C -0.563 4.563 10 H 0.090 0.910 11 C 0.024 3.976 12 N -0.825 5.825 13 Si 1.003 2.997 14 H -0.243 1.243 15 H -0.268 1.268 16 H -0.267 1.267 17 C 0.078 3.922 18 C 0.103 3.897 19 H 0.117 0.883 20 O -0.571 6.571 21 H 0.068 0.932 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.021 0.979 28 H 0.275 0.725 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 -6.995 13.243 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C -0.103 4.103 4 H 0.132 0.868 5 C -0.001 4.001 6 N -0.388 5.388 7 C 0.355 3.645 8 O -0.526 6.526 9 C -0.600 4.600 10 H 0.108 0.892 11 C -0.190 4.190 12 N -0.455 5.455 13 Si 0.821 3.179 14 H -0.166 1.166 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.045 4.045 18 C 0.043 3.957 19 H 0.135 0.865 20 O -0.379 6.379 21 H 0.087 0.913 22 H 0.052 0.948 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.941 -7.051 12.578 14.716 hybrid contribution 0.680 0.771 -0.782 1.292 sum 3.621 -6.280 11.796 13.845 Atomic orbital electron populations 1.21823 0.95494 1.02183 1.01591 1.21236 0.95674 0.93882 1.02581 1.22468 0.94214 0.97683 0.95903 0.86822 1.21685 0.89566 0.92497 0.96340 1.48471 1.17849 1.48652 1.23783 1.18537 0.88541 0.78923 0.78529 1.90543 1.43147 1.69891 1.49018 1.21420 1.01203 1.28365 1.08964 0.89164 1.27107 1.01041 0.96637 0.94254 1.70218 1.32952 1.32776 1.09538 0.84904 0.76375 0.77231 0.79343 1.16560 1.19292 1.19209 1.22999 0.92450 0.98448 0.90633 1.23123 0.93767 0.84197 0.94566 0.86545 1.86456 1.28079 1.47816 1.75578 0.91273 0.94824 0.91487 0.93391 0.89444 0.95219 0.96032 0.91505 0.91170 0.91111 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.76 71.98 0.70 -2.86 16 2 C -0.10 -2.42 4.92 30.59 0.15 -2.27 16 3 C -0.08 -2.41 2.92 -9.52 -0.03 -2.43 16 4 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 5 C 0.12 5.24 5.61 86.73 0.49 5.73 16 6 N -0.65 -31.87 3.33 -816.85 -2.72 -34.58 16 7 C 0.55 34.04 7.78 86.36 0.67 34.71 16 8 O -0.64 -46.02 15.35 -4.31 -0.07 -46.09 16 9 C -0.56 -32.95 8.98 24.83 0.22 -32.73 16 10 H 0.09 4.69 6.64 -2.91 -0.02 4.67 16 11 C 0.02 1.38 5.50 85.31 0.47 1.85 16 12 N -0.83 -52.27 11.83 21.84 0.26 -52.01 16 13 Si 1.00 41.41 29.56 68.60 2.03 43.44 16 14 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 15 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 16 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 17 C 0.08 2.75 6.26 86.86 0.54 3.30 16 18 C 0.10 2.72 4.18 32.08 0.13 2.85 16 19 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 20 O -0.57 -16.07 12.22 -148.98 -1.82 -17.89 16 21 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.03 0.93 7.49 -2.39 -0.02 0.91 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.46 7.44 -2.39 -0.02 1.44 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.02 1.02 7.75 -2.39 -0.02 1.00 16 28 H 0.28 15.65 8.29 -92.71 -0.77 14.88 16 29 H 0.07 2.48 7.14 -2.39 -0.02 2.47 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.39 7.87 9.11 -74.05 -0.67 7.20 16 Total: -1.00 -83.51 260.38 1.49 -82.02 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.45 Total: 16.96 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 3.35 Total: 8.15 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.46 Total: -86.59 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -1.89 Total: -63.98 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -83.51 1.49 -82.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.586 kcal (2) G-P(sol) polarization free energy of solvation -83.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds