Wall clock time and date at job start Sun Mar 29 2020 22:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48505 * 109.47187 * 240.00186 * 3 2 1 5 5 H 1.48494 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47219 * 120.00175 * 3 2 1 7 7 C 1.38955 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00110 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99614 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99881 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99994 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47408 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47201 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46862 * 60.00295 * 14 13 12 16 16 O 1.42903 * 109.47256 * 60.00148 * 15 14 13 17 17 C 1.53001 * 109.47329 * 299.99879 * 15 14 13 18 18 C 1.52997 * 109.47050 * 60.00237 * 17 15 14 19 19 H 0.96998 * 119.99680 * 359.97438 * 1 2 3 20 20 H 0.96991 * 120.00310 * 359.97438 * 9 7 2 21 21 H 1.09006 * 109.47347 * 300.00403 * 12 10 9 22 22 H 1.09009 * 109.46785 * 60.00103 * 13 12 10 23 23 H 1.08997 * 109.47329 * 300.00448 * 13 12 10 24 24 H 1.08997 * 109.47549 * 300.00564 * 14 13 12 25 25 H 1.08997 * 109.46932 * 180.02562 * 14 13 12 26 26 H 1.09008 * 109.47201 * 179.97438 * 15 14 13 27 27 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 28 28 H 1.08999 * 109.47164 * 180.02562 * 17 15 14 29 29 H 1.08997 * 109.47124 * 299.99757 * 17 15 14 30 30 H 1.08997 * 109.46932 * 180.02562 * 18 17 15 31 31 H 1.08997 * 109.47549 * 59.99780 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 6 2.2379 -6.0260 -0.0007 14 6 1.4728 -7.3509 0.0005 15 6 0.5919 -7.4323 -1.2478 16 8 1.4122 -7.3570 -2.4155 17 6 -0.4023 -6.2693 -1.2471 18 6 0.3627 -4.9443 -1.2483 19 1 -0.4849 0.8401 0.0004 20 1 0.3534 -2.3907 0.0002 21 1 0.6173 -4.9205 0.8903 22 1 2.8652 -5.9682 0.8889 23 1 2.8639 -5.9682 -0.8911 24 1 0.8471 -7.4084 0.8911 25 1 2.1811 -8.1794 0.0004 26 1 0.0471 -8.3765 -1.2472 27 1 0.9192 -7.4021 -3.2461 28 1 -1.0302 -6.3275 -2.1362 29 1 -1.0281 -6.3268 -0.3565 30 1 -0.3456 -4.1159 -1.2474 31 1 0.9885 -4.8869 -2.1389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306441371.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:24 Heat of formation + Delta-G solvation = -114.741457 kcal Electronic energy + Delta-G solvation = -14569.641091 eV Core-core repulsion = 12042.800846 eV Total energy + Delta-G solvation = -2526.840245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.36512 -37.58304 -34.62908 -33.84380 -31.30752 -30.38683 -29.59674 -25.07266 -22.66020 -22.31604 -19.86329 -18.77759 -17.81478 -16.72472 -15.92719 -15.43664 -14.58017 -14.49197 -13.95940 -13.51217 -13.02962 -12.94828 -12.56269 -11.97228 -11.75232 -11.59264 -11.50147 -11.02682 -10.94709 -10.74508 -10.40740 -10.20121 -10.06062 -9.84116 -9.57165 -9.44706 -8.22911 -7.91154 -6.37328 -3.77726 3.22905 3.27870 3.32843 3.97691 4.21084 4.36345 4.86655 4.92430 5.03973 5.20844 5.30076 5.48727 5.58160 5.66577 5.77061 5.83039 5.98610 6.05214 6.17669 6.19600 6.43433 6.54004 6.65980 6.76271 6.96537 7.59175 7.76588 8.11537 8.67163 9.22759 9.61348 10.13573 10.80524 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057932 B = 0.007272 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.205702 B = 3849.369874 C = 4067.368971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.447 3.553 11 O -0.595 6.595 12 C -0.096 4.096 13 C -0.089 4.089 14 C -0.113 4.113 15 C 0.105 3.895 16 O -0.560 6.560 17 C -0.150 4.150 18 C -0.105 4.105 19 H 0.271 0.729 20 H 0.392 0.608 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.372 0.628 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -11.814 -2.054 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.119 0.881 9 N -0.199 5.199 10 C 0.233 3.767 11 O -0.481 6.481 12 C -0.118 4.118 13 C -0.127 4.127 14 C -0.150 4.150 15 C 0.046 3.954 16 O -0.365 6.365 17 C -0.188 4.188 18 C -0.143 4.143 19 H 0.081 0.919 20 H 0.226 0.774 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.954 -11.584 -1.593 12.060 hybrid contribution -0.800 0.889 -0.365 1.251 sum -3.754 -10.695 -1.958 11.503 Atomic orbital electron populations 1.69606 1.05914 1.28156 1.50808 1.25248 0.95622 0.99658 0.97420 0.85932 0.78769 0.80544 0.79054 1.19928 1.20989 1.19939 1.19689 0.93367 0.82462 1.47502 0.88061 1.41906 1.09159 1.04627 1.64183 1.19936 0.88146 0.84924 0.83722 1.90501 1.14114 1.87414 1.56045 1.21151 0.97340 0.94636 0.98666 1.21157 0.97045 0.91166 1.03357 1.21594 0.98893 0.99063 0.95476 1.21796 0.91208 0.95855 0.86523 1.86578 1.37392 1.96919 1.15633 1.22255 0.98006 0.96260 1.02242 1.21426 0.98198 0.96299 0.98378 0.91891 0.77447 0.90514 0.91817 0.90627 0.91003 0.91588 0.93407 0.78212 0.91927 0.91101 0.91529 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.63 9.68 -14.93 -0.14 -8.78 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.78 5.18 -10.96 -0.06 -14.84 16 10 C 0.45 11.06 7.11 -10.98 -0.08 10.98 16 11 O -0.60 -16.96 15.56 5.55 0.09 -16.88 16 12 C -0.10 -1.80 2.52 -91.77 -0.23 -2.03 16 13 C -0.09 -1.56 4.35 -26.73 -0.12 -1.68 16 14 C -0.11 -1.50 5.66 -26.73 -0.15 -1.66 16 15 C 0.10 1.27 3.77 -26.73 -0.10 1.17 16 16 O -0.56 -7.38 11.97 -35.23 -0.42 -7.80 16 17 C -0.15 -1.84 5.64 -26.73 -0.15 -1.99 16 18 C -0.11 -1.71 4.96 -26.73 -0.13 -1.85 16 19 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 20 H 0.39 9.83 7.32 -40.82 -0.30 9.54 16 21 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 22 H 0.06 1.16 8.10 -51.92 -0.42 0.74 16 23 H 0.08 1.50 7.64 -51.93 -0.40 1.11 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.37 3.31 9.08 45.56 0.41 3.72 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.12 7.56 -51.93 -0.39 0.72 16 31 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 LS Contribution 257.52 15.07 3.88 3.88 Total: -1.00 -32.47 257.52 -5.55 -38.03 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -3.54 Total: 10.77 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.20 Total: -5.32 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.67 Total: -39.13 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.34 Total: -24.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.47 -5.55 -38.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306441371.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.715 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds