Wall clock time and date at job start Sun Mar 29 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47199 * 2 1 4 4 C 1.46899 * 110.99843 * 289.84630 * 3 2 1 5 5 C 1.53235 * 109.34076 * 172.74882 * 4 3 2 6 6 H 1.09003 * 109.62891 * 173.54386 * 5 4 3 7 7 C 1.53006 * 109.62560 * 294.11994 * 5 4 3 8 8 N 1.47079 * 108.52329 * 53.82928 * 5 4 3 9 9 C 1.36932 * 120.88106 * 128.83840 * 8 5 4 10 10 H 1.08004 * 120.00200 * 333.14523 * 9 8 5 11 11 C 1.38817 * 119.99909 * 153.14492 * 9 8 5 12 12 N 1.31625 * 119.99830 * 343.44672 * 11 9 8 13 13 Si 1.86795 * 120.00164 * 163.45170 * 11 9 8 14 14 H 1.48498 * 109.47378 * 59.99451 * 13 11 9 15 15 H 1.48498 * 109.47231 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46957 * 299.99989 * 13 11 9 17 17 C 1.47084 * 118.23585 * 308.81695 * 8 5 4 18 18 C 1.46899 * 110.99984 * 165.54977 * 3 2 1 19 19 H 1.08997 * 109.49644 * 67.26284 * 18 3 2 20 20 C 1.53001 * 109.48972 * 307.20814 * 18 3 2 21 21 H 1.08998 * 109.46923 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47023 * 299.99856 * 1 2 3 23 23 H 1.08992 * 109.46796 * 60.00205 * 1 2 3 24 24 H 1.09002 * 109.47186 * 239.99413 * 2 1 3 25 25 H 1.09002 * 109.46839 * 120.00306 * 2 1 3 26 26 H 1.09008 * 109.49511 * 292.70875 * 4 3 2 27 27 H 1.08996 * 109.49302 * 52.78436 * 4 3 2 28 28 H 1.08999 * 109.47191 * 60.00180 * 7 5 4 29 29 H 1.08999 * 109.46705 * 179.97438 * 7 5 4 30 30 H 1.08999 * 109.47088 * 299.99503 * 7 5 4 31 31 H 0.97003 * 119.99369 * 180.02562 * 12 11 9 32 32 H 1.08992 * 109.62714 * 291.47351 * 17 8 5 33 33 H 1.09001 * 109.62829 * 170.89577 * 17 8 5 34 34 H 1.09003 * 109.47170 * 67.36306 * 20 18 3 35 35 H 1.09000 * 109.47127 * 187.36235 * 20 18 3 36 36 H 1.09000 * 109.47627 * 307.36418 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7562 2.0365 -1.2900 5 6 2.1143 3.5230 -1.1902 6 1 2.0300 3.9867 -2.1731 7 6 1.1667 4.2151 -0.2082 8 7 3.4983 3.6389 -0.7063 9 6 4.4121 4.4138 -1.3692 10 1 4.3011 4.5928 -2.4285 11 6 5.4813 4.9692 -0.6798 12 7 5.4540 5.0352 0.6346 13 14 6.9587 5.6233 -1.6172 14 1 6.5227 6.7057 -2.5356 15 1 7.9557 6.1610 -0.6570 16 1 7.5719 4.5234 -2.4044 17 6 3.8746 2.9007 0.5090 18 6 3.4473 1.4386 0.3422 19 1 4.0301 0.9776 -0.4552 20 6 3.6871 0.6842 1.6515 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 2.3627 1.5675 -2.0650 27 1 0.7007 1.9325 -1.5410 28 1 1.2613 3.7533 0.7746 29 1 1.4239 5.2720 -0.1389 30 1 0.1403 4.1129 -0.5605 31 1 6.2010 5.4237 1.1162 32 1 3.3688 3.3339 1.3718 33 1 4.9542 2.9529 0.6496 34 1 3.5052 -0.3793 1.4967 35 1 4.7177 0.8334 1.9734 36 1 3.0091 1.0609 2.4174 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306443789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:57 Heat of formation + Delta-G solvation = 24.865549 kcal Electronic energy + Delta-G solvation = -15412.989218 eV Core-core repulsion = 13125.754543 eV Total energy + Delta-G solvation = -2287.234674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.64702 -34.89167 -32.59178 -31.84254 -29.41701 -28.12369 -25.75868 -24.86538 -23.08006 -21.23999 -20.34276 -18.20132 -16.74614 -15.22369 -15.10000 -14.36118 -14.00432 -13.73704 -13.42812 -13.22239 -12.70472 -12.00342 -11.85666 -11.74308 -11.49720 -11.29823 -11.13028 -10.98260 -10.78080 -10.59882 -10.40028 -10.24417 -9.99841 -9.88921 -9.56589 -9.33839 -8.44626 -7.65846 -6.60068 -5.73310 -3.14270 3.40662 3.46252 3.47486 4.47227 4.54572 5.30478 5.40612 5.41850 5.57438 5.66821 5.79287 5.88893 5.94559 6.04685 6.08331 6.16722 6.22555 6.26759 6.38012 6.42088 6.51399 6.62351 6.68573 6.75508 6.88116 7.06621 7.23222 7.40711 7.74050 7.78086 7.82516 7.92598 8.49526 9.26799 9.90478 10.49628 11.34977 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042263 B = 0.009970 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.364652 B = 2807.769634 C = 3090.952465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 N -0.525 5.525 4 C 0.049 3.951 5 C 0.168 3.832 6 H 0.059 0.941 7 C -0.147 4.147 8 N -0.589 5.589 9 C -0.250 4.250 10 H 0.064 0.936 11 C 0.002 3.998 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.285 1.285 17 C 0.186 3.814 18 C 0.056 3.944 19 H 0.029 0.971 20 C -0.141 4.141 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.023 0.977 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.253 0.747 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 -8.259 -0.329 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 N -0.250 5.250 4 C -0.080 4.080 5 C 0.061 3.939 6 H 0.077 0.923 7 C -0.207 4.207 8 N -0.311 5.311 9 C -0.380 4.380 10 H 0.082 0.918 11 C -0.197 4.197 12 N -0.547 5.547 13 Si 0.732 3.268 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.060 3.940 18 C -0.053 4.053 19 H 0.047 0.953 20 C -0.199 4.199 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.697 -7.901 0.132 10.359 hybrid contribution 1.224 -0.093 -1.071 1.629 sum -5.473 -7.994 -0.939 9.734 Atomic orbital electron populations 1.21755 0.95686 1.00407 1.02275 1.22169 0.95516 0.90847 1.00176 1.62019 1.17584 1.14464 1.30971 1.22610 0.98956 0.97259 0.89203 1.20599 0.86066 0.91145 0.96130 0.92263 1.22075 0.96834 1.00426 1.01351 1.44200 1.04505 1.52815 1.29570 1.19145 1.03378 1.24148 0.91317 0.91813 1.25018 1.00443 0.98735 0.95482 1.70022 1.31115 1.47970 1.05601 0.86384 0.82856 0.78698 0.78909 1.20956 1.21644 1.21190 1.20866 1.00307 0.84422 0.88360 1.22464 0.86795 1.00743 0.95309 0.95258 1.21841 1.01657 0.98387 0.97980 0.93249 0.92114 0.92972 0.96044 0.90797 0.95830 0.91876 0.92319 0.93586 0.95061 0.93653 0.95545 0.89582 0.93814 0.92331 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.94 37.16 0.37 -1.47 16 2 C 0.04 0.62 5.45 -3.82 -0.02 0.60 16 3 N -0.52 -9.62 3.94 -226.35 -0.89 -10.52 16 4 C 0.05 0.92 4.86 -3.70 -0.02 0.91 16 5 C 0.17 3.65 3.32 -67.49 -0.22 3.43 16 6 H 0.06 1.28 7.95 -51.93 -0.41 0.86 16 7 C -0.15 -3.02 9.21 37.16 0.34 -2.68 16 8 N -0.59 -15.05 2.73 -164.48 -0.45 -15.50 16 9 C -0.25 -6.97 9.63 -15.06 -0.15 -7.11 16 10 H 0.06 1.75 7.88 -52.48 -0.41 1.33 16 11 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 12 N -0.90 -26.35 11.14 55.49 0.62 -25.73 16 13 Si 0.90 21.94 29.58 -169.99 -5.03 16.91 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.19 4.55 4.29 -3.60 -0.02 4.54 16 18 C 0.06 1.13 2.60 -67.59 -0.18 0.96 16 19 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 20 C -0.14 -2.36 8.51 37.16 0.32 -2.04 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 24 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 25 H 0.07 1.05 5.58 -51.93 -0.29 0.76 16 26 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.06 1.05 6.37 -51.93 -0.33 0.72 16 28 H 0.06 1.26 7.06 -51.93 -0.37 0.90 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.03 0.69 7.60 -51.93 -0.39 0.30 16 33 H 0.09 2.34 6.12 -51.93 -0.32 2.02 16 34 H 0.04 0.63 6.47 -51.93 -0.34 0.30 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 274.60 15.07 4.14 4.14 Total: -1.00 -28.99 274.60 -7.41 -36.40 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.14 Total: -2.78 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 0.34 Total: -2.92 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.72 Total: -51.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.99 -7.41 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306443789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.263 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds