Wall clock time and date at job start Sun Mar 29 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.49336 * 2 1 4 4 C 1.53049 * 109.49134 * 239.95473 * 2 1 3 5 5 N 1.46961 * 109.36822 * 298.41381 * 4 2 1 6 6 C 1.46895 * 111.00162 * 176.80996 * 5 4 2 7 7 C 1.50698 * 109.47280 * 59.19617 * 6 5 4 8 8 H 1.08002 * 119.99732 * 5.43973 * 7 6 5 9 9 C 1.37877 * 119.99894 * 185.45013 * 7 6 5 10 10 N 1.31504 * 120.00323 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99532 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47342 * 59.99783 * 11 9 7 13 13 H 1.48504 * 109.46769 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47372 * 299.99234 * 11 9 7 15 15 C 1.46954 * 110.88069 * 300.68324 * 5 4 2 16 16 H 1.09003 * 109.48716 * 299.35152 * 15 5 4 17 17 C 1.52999 * 109.48943 * 179.28559 * 15 5 4 18 18 C 1.53049 * 109.36542 * 59.31510 * 15 5 4 19 19 N 1.46951 * 109.38492 * 301.58855 * 18 15 5 20 20 C 1.46903 * 111.00580 * 183.20009 * 19 18 15 21 21 H 1.08996 * 109.47480 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47526 * 300.04866 * 1 2 3 23 23 H 1.09001 * 109.46685 * 60.04671 * 1 2 3 24 24 H 1.09005 * 109.49085 * 178.45009 * 4 2 1 25 25 H 1.09001 * 109.49094 * 58.38484 * 4 2 1 26 26 H 1.09003 * 109.46929 * 179.19126 * 6 5 4 27 27 H 1.08999 * 109.47226 * 299.18758 * 6 5 4 28 28 H 0.97006 * 120.00308 * 180.02562 * 10 9 7 29 29 H 1.08997 * 109.47258 * 300.10223 * 17 15 5 30 30 H 1.08994 * 109.47089 * 60.10744 * 17 15 5 31 31 H 1.09000 * 109.47177 * 180.10685 * 17 15 5 32 32 H 1.08997 * 109.49324 * 61.57172 * 18 15 5 33 33 H 1.09007 * 109.48991 * 181.61209 * 18 15 5 34 34 H 1.09002 * 109.46678 * 56.04363 * 20 19 18 35 35 H 1.08998 * 109.47395 * 176.04640 * 20 19 18 36 36 H 1.08994 * 109.47006 * 296.04858 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 1.5813 -2.1182 -1.2266 6 6 1.9882 -2.8259 -2.4479 7 6 3.4901 -2.7964 -2.5688 8 1 4.0879 -2.3794 -1.7719 9 6 4.1008 -3.3015 -3.6970 10 7 3.3729 -3.8095 -4.6673 11 14 5.9624 -3.2643 -3.8472 12 1 6.5645 -4.0419 -2.7345 13 1 6.3664 -3.8634 -5.1446 14 1 6.4363 -1.8584 -3.7818 15 6 2.0719 -2.8119 -0.0276 16 1 3.1619 -2.8116 -0.0277 17 6 1.5615 -4.2543 -0.0277 18 6 1.5612 -2.0896 1.2213 19 7 2.0206 -0.6938 1.1995 20 6 1.6137 0.0135 2.4211 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5146 0.8895 23 1 -0.3633 0.5131 -0.8904 24 1 3.1303 -0.6984 -1.2629 25 1 1.6542 -0.2266 -2.1394 26 1 1.6480 -3.8603 -2.3988 27 1 1.5441 -2.3381 -3.3155 28 1 3.8027 -4.1652 -5.4609 29 1 0.4715 -4.2539 -0.0285 30 1 1.9253 -4.7684 -0.9172 31 1 1.9239 -4.7680 0.8627 32 1 0.4716 -2.1136 1.2354 33 1 1.9474 -2.5856 2.1118 34 1 1.9875 -0.5230 3.2931 35 1 2.0258 1.0225 2.4110 36 1 0.5259 0.0658 2.4654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306457285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:24 Heat of formation + Delta-G solvation = 9.589711 kcal Electronic energy + Delta-G solvation = -15316.260029 eV Core-core repulsion = 13028.362944 eV Total energy + Delta-G solvation = -2287.897085 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.26582 -35.43472 -32.55484 -32.07296 -29.39156 -27.42030 -25.92464 -25.10936 -23.45745 -21.93802 -20.22105 -18.17424 -16.18297 -15.65450 -15.09801 -14.59385 -14.48109 -14.04047 -13.78422 -12.88115 -12.83601 -12.28016 -12.02474 -11.76441 -11.61009 -11.43347 -11.20972 -11.06596 -10.87716 -10.76003 -10.51300 -10.21002 -10.05403 -9.80455 -9.76537 -9.34171 -8.36898 -7.92780 -7.07568 -5.97910 -4.06487 3.32093 3.36549 3.39937 4.30902 4.44836 5.04571 5.31570 5.32219 5.36680 5.53199 5.58384 5.76124 5.80377 5.91676 5.96404 6.00278 6.11698 6.17395 6.25424 6.32423 6.46208 6.57150 6.75409 6.86864 6.92908 7.02409 7.30337 7.43892 7.50262 7.60173 7.96188 8.14159 8.36205 8.37618 9.04458 9.60015 11.06675 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.009218 C = 0.009014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.812025 B = 3036.916257 C = 3105.497648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 H 0.073 0.927 4 C 0.071 3.929 5 N -0.536 5.536 6 C 0.184 3.816 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.089 3.911 16 H 0.052 0.948 17 C -0.140 4.140 18 C 0.060 3.940 19 N -0.538 5.538 20 C 0.024 3.976 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 4.962 10.456 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 H 0.091 0.909 4 C -0.057 4.057 5 N -0.260 5.260 6 C 0.058 3.942 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.138 4.138 10 N -0.532 5.532 11 Si 0.715 3.285 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.021 4.021 16 H 0.070 0.930 17 C -0.198 4.198 18 C -0.068 4.068 19 N -0.262 5.262 20 C -0.124 4.124 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.286 4.873 10.274 12.152 hybrid contribution 1.133 0.032 -0.201 1.151 sum -3.153 4.905 10.073 11.639 Atomic orbital electron populations 1.22296 0.97490 1.02961 1.00477 1.21862 0.93108 0.97178 0.90718 0.90853 1.21903 0.98988 0.90137 0.94720 1.62674 1.58250 1.01498 1.03612 1.19803 0.93789 0.94282 0.86299 1.21733 0.93336 1.40181 1.03184 0.92477 1.24947 0.97918 0.95168 0.95739 1.69931 1.35259 1.40364 1.07606 0.86731 0.86209 0.78326 0.77195 1.20303 1.21312 1.20304 1.21398 0.98304 0.92869 0.89485 0.92985 1.21787 1.00508 0.95759 1.01723 1.22281 0.97931 0.88179 0.98377 1.62350 1.59357 1.02566 1.01880 1.22342 0.98203 0.99015 0.92882 0.90981 0.94094 0.92541 0.93405 0.91411 0.94813 0.95025 0.92858 0.93194 0.90892 0.93721 0.94380 0.91695 0.92048 0.91952 0.95686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 8.37 37.16 0.31 -2.29 16 2 C 0.08 1.32 2.97 -67.63 -0.20 1.12 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.07 1.44 4.67 -3.77 -0.02 1.42 16 5 N -0.54 -11.48 4.05 -227.93 -0.92 -12.40 16 6 C 0.18 4.70 4.80 -4.98 -0.02 4.67 16 7 C -0.55 -14.99 7.65 -34.44 -0.26 -15.25 16 8 H 0.06 1.59 5.83 -52.49 -0.31 1.28 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.09 1.75 2.26 -67.66 -0.15 1.60 16 16 H 0.05 1.18 6.76 -51.93 -0.35 0.83 16 17 C -0.14 -2.55 8.87 37.16 0.33 -2.23 16 18 C 0.06 1.00 4.52 -3.77 -0.02 0.98 16 19 N -0.54 -8.76 4.92 -234.70 -1.15 -9.91 16 20 C 0.02 0.31 9.29 60.07 0.56 0.87 16 21 H 0.07 1.20 5.94 -51.93 -0.31 0.89 16 22 H 0.04 0.54 6.48 -51.93 -0.34 0.20 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 1.08 6.64 -51.93 -0.34 0.74 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.03 0.91 6.00 -51.93 -0.31 0.60 16 27 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.52 6.26 -51.93 -0.33 1.20 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.62 6.35 -51.93 -0.33 0.29 16 33 H 0.06 0.98 8.13 -51.92 -0.42 0.56 16 34 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.31 6.38 -51.93 -0.33 -0.03 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -28.57 270.17 -7.75 -36.32 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.88 Total: -1.82 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 0.43 Total: -7.38 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -1.34 Total: -47.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.57 -7.75 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306457285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.910 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds