Wall clock time and date at job start Sun Mar 29 2020 21:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.49336 * 2 1 4 4 C 1.53049 * 109.49134 * 239.95473 * 2 1 3 5 5 N 1.46961 * 109.36822 * 298.41381 * 4 2 1 6 6 C 1.46895 * 111.00162 * 176.80996 * 5 4 2 7 7 C 1.50698 * 109.47280 * 59.19617 * 6 5 4 8 8 H 1.08002 * 119.99732 * 5.43973 * 7 6 5 9 9 C 1.37877 * 119.99894 * 185.45013 * 7 6 5 10 10 N 1.31504 * 120.00323 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99532 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47342 * 59.99783 * 11 9 7 13 13 H 1.48504 * 109.46769 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47372 * 299.99234 * 11 9 7 15 15 C 1.46954 * 110.88069 * 300.68324 * 5 4 2 16 16 H 1.09003 * 109.48716 * 299.35152 * 15 5 4 17 17 C 1.52999 * 109.48943 * 179.28559 * 15 5 4 18 18 C 1.53049 * 109.36542 * 59.31510 * 15 5 4 19 19 N 1.46951 * 109.38492 * 301.58855 * 18 15 5 20 20 C 1.46903 * 111.00580 * 183.20009 * 19 18 15 21 21 H 1.08996 * 109.47480 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47526 * 300.04866 * 1 2 3 23 23 H 1.09001 * 109.46685 * 60.04671 * 1 2 3 24 24 H 1.09005 * 109.49085 * 178.45009 * 4 2 1 25 25 H 1.09001 * 109.49094 * 58.38484 * 4 2 1 26 26 H 1.09003 * 109.46929 * 179.19126 * 6 5 4 27 27 H 1.08999 * 109.47226 * 299.18758 * 6 5 4 28 28 H 0.97006 * 120.00308 * 180.02562 * 10 9 7 29 29 H 1.08997 * 109.47258 * 300.10223 * 17 15 5 30 30 H 1.08994 * 109.47089 * 60.10744 * 17 15 5 31 31 H 1.09000 * 109.47177 * 180.10685 * 17 15 5 32 32 H 1.08997 * 109.49324 * 61.57172 * 18 15 5 33 33 H 1.09007 * 109.48991 * 181.61209 * 18 15 5 34 34 H 1.09002 * 109.46678 * 56.04363 * 20 19 18 35 35 H 1.08998 * 109.47395 * 176.04640 * 20 19 18 36 36 H 1.08994 * 109.47006 * 296.04858 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 1.5813 -2.1182 -1.2266 6 6 1.9882 -2.8259 -2.4479 7 6 3.4901 -2.7964 -2.5688 8 1 4.0879 -2.3794 -1.7719 9 6 4.1008 -3.3015 -3.6970 10 7 3.3729 -3.8095 -4.6673 11 14 5.9624 -3.2643 -3.8472 12 1 6.5645 -4.0419 -2.7345 13 1 6.3664 -3.8634 -5.1446 14 1 6.4363 -1.8584 -3.7818 15 6 2.0719 -2.8119 -0.0276 16 1 3.1619 -2.8116 -0.0277 17 6 1.5615 -4.2543 -0.0277 18 6 1.5612 -2.0896 1.2213 19 7 2.0206 -0.6938 1.1995 20 6 1.6137 0.0135 2.4211 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5146 0.8895 23 1 -0.3633 0.5131 -0.8904 24 1 3.1303 -0.6984 -1.2629 25 1 1.6542 -0.2266 -2.1394 26 1 1.6480 -3.8603 -2.3988 27 1 1.5441 -2.3381 -3.3155 28 1 3.8027 -4.1652 -5.4609 29 1 0.4715 -4.2539 -0.0285 30 1 1.9253 -4.7684 -0.9172 31 1 1.9239 -4.7680 0.8627 32 1 0.4716 -2.1136 1.2354 33 1 1.9474 -2.5856 2.1118 34 1 1.9875 -0.5230 3.2931 35 1 2.0258 1.0225 2.4110 36 1 0.5259 0.0658 2.4654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306457285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:23 Heat of formation + Delta-G solvation = -10.596317 kcal Electronic energy + Delta-G solvation = -15317.135361 eV Core-core repulsion = 13028.362944 eV Total energy + Delta-G solvation = -2288.772416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73507 -37.03659 -34.56480 -33.61301 -30.91934 -28.97869 -27.55952 -26.61130 -25.02003 -23.65438 -21.79781 -19.79535 -18.17233 -17.21755 -16.56992 -16.42666 -15.96448 -15.58273 -15.14051 -14.67307 -14.24275 -13.95892 -13.49406 -13.26868 -13.05193 -12.94713 -12.74631 -12.59571 -12.57260 -12.32712 -12.20851 -11.94349 -11.81707 -11.60967 -11.48068 -11.03179 -10.55953 -9.17727 -8.92404 -8.12908 -6.31976 1.35881 1.36967 1.45288 2.37720 3.08442 3.10648 3.37924 3.97609 4.10078 4.19540 4.34490 4.48969 4.53506 4.60815 4.70753 4.76517 4.81646 4.83065 4.93183 5.00231 5.12086 5.13809 5.18763 5.26546 5.32854 5.38491 5.45029 5.53092 5.78737 6.09084 6.18139 6.19952 6.38716 6.60804 6.89506 7.38659 8.88258 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.009218 C = 0.009014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.812025 B = 3036.916257 C = 3105.497648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.087 3.913 3 H 0.090 0.910 4 C 0.072 3.928 5 N -0.530 5.530 6 C 0.198 3.802 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.013 3.987 10 N -0.926 5.926 11 Si 0.953 3.047 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.273 1.273 15 C 0.086 3.914 16 H 0.018 0.982 17 C -0.133 4.133 18 C 0.070 3.930 19 N -0.556 5.556 20 C 0.026 3.974 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.017 0.983 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.001 0.999 28 H 0.264 0.736 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 5.808 12.484 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 H 0.108 0.892 4 C -0.057 4.057 5 N -0.254 5.254 6 C 0.071 3.929 7 C -0.589 4.589 8 H 0.068 0.932 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.778 3.222 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.198 1.198 15 C -0.023 4.023 16 H 0.036 0.964 17 C -0.191 4.191 18 C -0.058 4.058 19 N -0.281 5.281 20 C -0.122 4.122 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.019 0.981 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.263 5.731 12.327 14.246 hybrid contribution 1.103 -0.216 -0.807 1.384 sum -3.159 5.515 11.520 13.157 Atomic orbital electron populations 1.22188 0.95957 1.02266 1.01860 1.21754 0.94170 0.97196 0.89078 0.89209 1.21914 0.97102 0.89741 0.96947 1.62631 1.57942 1.02022 1.02796 1.19454 0.92706 0.93415 0.87299 1.21908 0.94274 1.39738 1.02992 0.93201 1.25755 1.02621 0.94837 0.95443 1.70047 1.37155 1.41213 1.08148 0.85693 0.80567 0.78494 0.77446 1.19676 1.20554 1.19783 1.21496 0.96419 0.94172 0.90214 0.96359 1.21711 1.01129 0.94800 1.01435 1.22155 0.98264 0.88451 0.96899 1.62316 1.60101 1.02604 1.03041 1.22409 0.99026 0.99367 0.91375 0.92636 0.91520 0.92363 0.96506 0.92329 0.96492 0.98126 0.92674 0.92048 0.94327 0.90818 0.93556 0.89607 0.90704 0.90788 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 8.37 71.98 0.60 -3.91 16 2 C 0.09 2.71 2.97 44.91 0.13 2.84 16 3 H 0.09 2.53 8.14 -2.39 -0.02 2.52 16 4 C 0.07 2.94 4.67 86.31 0.40 3.34 16 5 N -0.53 -23.17 4.05 -875.04 -3.54 -26.72 16 6 C 0.20 10.58 4.80 85.56 0.41 10.99 16 7 C -0.55 -31.24 7.65 25.60 0.20 -31.05 16 8 H 0.05 2.86 5.83 -2.91 -0.02 2.85 16 9 C 0.01 0.73 5.46 84.66 0.46 1.19 16 10 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 11 Si 0.95 45.06 29.54 68.60 2.03 47.08 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 15 C 0.09 3.38 2.26 44.92 0.10 3.48 16 16 H 0.02 0.84 6.76 -2.39 -0.02 0.83 16 17 C -0.13 -4.80 8.87 71.98 0.64 -4.17 16 18 C 0.07 2.17 4.52 86.31 0.39 2.56 16 19 N -0.56 -16.72 4.92 -896.46 -4.41 -21.13 16 20 C 0.03 0.56 9.29 127.69 1.19 1.74 16 21 H 0.05 1.72 5.94 -2.39 -0.01 1.71 16 22 H 0.07 1.50 6.48 -2.39 -0.02 1.49 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.02 0.78 6.64 -2.38 -0.02 0.76 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.02 0.96 6.00 -2.39 -0.01 0.95 16 27 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 1.64 6.26 -2.39 -0.01 1.63 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.38 6.35 -2.39 -0.02 1.36 16 33 H 0.09 2.31 8.13 -2.38 -0.02 2.29 16 34 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 0.72 6.38 -2.39 -0.02 0.70 16 Total: -1.00 -62.65 270.17 -0.08 -62.73 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.04 Total: 6.55 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.52 Total: -12.97 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -7.67 Total: -103.40 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -62.65 -0.08 -62.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306457285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.135 kcal (2) G-P(sol) polarization free energy of solvation -62.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds