Wall clock time and date at job start Sun Mar 29 2020 21:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.50312 * 2 1 4 4 C 1.53042 * 109.48964 * 239.94439 * 2 1 3 5 5 N 1.46956 * 109.36474 * 181.63186 * 4 2 1 6 6 C 1.46902 * 110.99900 * 183.19084 * 5 4 2 7 7 C 1.46992 * 110.89694 * 59.32025 * 5 4 2 8 8 H 1.09001 * 109.48186 * 60.64012 * 7 5 4 9 9 C 1.52999 * 109.52383 * 180.72380 * 7 5 4 10 10 C 1.53056 * 109.33916 * 300.69699 * 7 5 4 11 11 N 1.46954 * 109.48914 * 120.04951 * 2 1 3 12 12 C 1.46897 * 111.00197 * 303.15985 * 11 2 1 13 13 C 1.50707 * 109.46988 * 170.15142 * 12 11 2 14 14 H 1.08002 * 119.99949 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99651 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00231 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99566 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47272 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47051 * 120.00455 * 17 15 13 20 20 H 1.48501 * 109.46972 * 240.00282 * 17 15 13 21 21 H 1.08999 * 109.47344 * 299.94677 * 1 2 3 22 22 H 1.09000 * 109.47374 * 59.94783 * 1 2 3 23 23 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.49013 * 301.59889 * 4 2 1 25 25 H 1.09002 * 109.49164 * 61.64320 * 4 2 1 26 26 H 1.08996 * 109.47474 * 56.04570 * 6 5 4 27 27 H 1.09009 * 109.47061 * 176.04427 * 6 5 4 28 28 H 1.09000 * 109.47109 * 296.04484 * 6 5 4 29 29 H 1.09007 * 109.46860 * 179.87861 * 9 7 5 30 30 H 1.08996 * 109.47159 * 299.87833 * 9 7 5 31 31 H 1.09003 * 109.46726 * 59.87980 * 9 7 5 32 32 H 1.09002 * 109.48813 * 298.40763 * 10 7 5 33 33 H 1.09002 * 109.48870 * 178.36652 * 10 7 5 34 34 H 1.08993 * 109.47190 * 290.15151 * 12 11 2 35 35 H 1.08996 * 109.47227 * 50.15463 * 12 11 2 36 36 H 0.97002 * 119.99599 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7226 -1.2487 5 7 3.5096 -0.7552 -1.2264 6 6 4.0411 -1.3751 -2.4476 7 6 4.0004 -1.4491 -0.0271 8 1 3.6364 -2.4766 -0.0270 9 6 5.5304 -1.4491 -0.0265 10 6 3.4893 -0.7264 1.2215 11 7 2.0203 -0.6937 1.1991 12 6 1.4888 -0.0738 2.4203 13 6 1.8100 -0.9456 3.6069 14 1 2.3549 -1.8676 3.4678 15 6 1.4092 -0.5654 4.8702 16 7 0.7461 0.5577 5.0395 17 14 1.8079 -1.6456 6.3411 18 1 2.5567 -2.8447 5.8862 19 1 2.6380 -0.8809 7.3063 20 1 0.5466 -2.0696 7.0002 21 1 -0.3634 0.5130 0.8904 22 1 -0.3634 0.5146 -0.8895 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6544 -1.7418 -1.2626 25 1 1.7019 -0.1932 -2.1393 26 1 3.6604 -0.8440 -3.3199 27 1 5.1299 -1.3233 -2.4371 28 1 3.7274 -2.4181 -2.4917 29 1 5.8934 -1.9620 0.8643 30 1 5.8941 -1.9639 -0.9157 31 1 5.8937 -0.4214 -0.0275 32 1 3.8755 0.2928 1.2354 33 1 3.8278 -1.2557 2.1123 34 1 1.9430 0.9075 2.5568 35 1 0.4079 0.0352 2.3316 36 1 0.4638 0.8249 5.9283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306457289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:29 Heat of formation + Delta-G solvation = 7.425722 kcal Electronic energy + Delta-G solvation = -15031.116133 eV Core-core repulsion = 12743.125210 eV Total energy + Delta-G solvation = -2287.990922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.09044 -35.42707 -32.92711 -32.22370 -29.51018 -27.98685 -26.01049 -24.52142 -23.52950 -21.71120 -20.01114 -18.95731 -16.38468 -15.45207 -15.19808 -14.75460 -14.46584 -14.25349 -13.54260 -13.11245 -12.86254 -12.44573 -12.05063 -11.90288 -11.70356 -11.40100 -11.33022 -11.17514 -11.03967 -10.76650 -10.63718 -10.34745 -10.25746 -10.08299 -9.44278 -9.10487 -8.39379 -8.04462 -7.16550 -6.00206 -4.00825 3.32033 3.39380 3.44170 4.19206 4.44191 4.88792 5.24211 5.26553 5.35220 5.41008 5.59168 5.68791 5.74100 5.79415 5.81709 5.92022 6.02905 6.06752 6.12001 6.19475 6.31336 6.46287 6.49433 6.68115 6.77464 6.82430 7.28937 7.34793 7.42379 7.46223 7.84334 8.14983 8.27414 8.60952 9.07058 9.62994 11.10746 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037230 B = 0.008911 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.900980 B = 3141.436575 C = 3707.743787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.036 0.964 4 C 0.066 3.934 5 N -0.542 5.542 6 C 0.024 3.976 7 C 0.080 3.920 8 H 0.045 0.955 9 C -0.144 4.144 10 C 0.074 3.926 11 N -0.535 5.535 12 C 0.189 3.811 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.086 0.914 34 H -0.011 1.011 35 H 0.039 0.961 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -2.724 -11.729 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.062 4.062 5 N -0.267 5.267 6 C -0.125 4.125 7 C -0.028 4.028 8 H 0.063 0.937 9 C -0.202 4.202 10 C -0.055 4.055 11 N -0.260 5.260 12 C 0.064 3.936 13 C -0.544 4.544 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.087 0.913 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.007 0.993 35 H 0.057 0.943 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.747 -2.616 -11.584 12.789 hybrid contribution 0.133 -0.476 0.864 0.995 sum 4.879 -3.092 -10.720 12.177 Atomic orbital electron populations 1.21850 0.94641 1.02187 1.01425 1.21547 0.94956 0.95591 0.90761 0.94583 1.22184 0.86709 0.99378 0.97904 1.62178 1.08824 1.53648 1.02055 1.22376 1.00666 0.96727 0.92699 1.21792 0.94495 0.96178 0.90365 0.93747 1.21853 0.94791 1.02241 1.01288 1.22010 0.88990 0.98497 0.95959 1.62289 1.06951 1.53939 1.02868 1.19810 0.95871 0.92846 0.85087 1.21213 1.35458 1.06803 0.90893 0.91966 1.24982 0.95396 0.95276 0.98986 1.69968 1.39004 1.22321 1.22566 0.86473 0.78045 0.80542 0.82548 1.19709 1.21136 1.21044 0.91303 0.93402 0.92293 0.94452 0.91330 0.91993 0.91340 0.96094 0.92052 0.92956 0.92051 0.95404 0.89622 0.99303 0.94290 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.89 37.16 0.33 -2.18 16 2 C 0.08 1.54 2.56 -67.66 -0.17 1.37 16 3 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.07 1.08 4.90 -3.77 -0.02 1.06 16 5 N -0.54 -8.62 4.78 -234.70 -1.12 -9.74 16 6 C 0.02 0.30 9.13 60.07 0.55 0.84 16 7 C 0.08 1.35 2.56 -67.63 -0.17 1.17 16 8 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 9 C -0.14 -1.98 8.86 37.16 0.33 -1.65 16 10 C 0.07 1.52 4.71 -3.76 -0.02 1.50 16 11 N -0.54 -11.95 4.52 -227.93 -1.03 -12.98 16 12 C 0.19 4.99 4.49 -4.97 -0.02 4.96 16 13 C -0.50 -14.31 8.47 -34.44 -0.29 -14.60 16 14 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H 0.07 1.35 6.15 -51.93 -0.32 1.03 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.07 0.78 6.26 -51.92 -0.33 0.45 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.62 6.37 -51.93 -0.33 0.29 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.86 6.78 -51.93 -0.35 1.51 16 34 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 35 H 0.04 1.08 5.74 -51.93 -0.30 0.78 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 277.87 15.07 4.19 4.19 Total: -1.00 -29.86 277.87 -8.04 -37.90 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -6.20 Total: -3.92 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 0.41 Total: -6.06 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -1.42 Total: -48.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.86 -8.04 -37.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306457289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.326 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds