Wall clock time and date at job start Sun Mar 29 2020 22:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.47904 * 111.00099 * 290.79851 * 10 9 7 12 12 C 1.55033 * 104.87162 * 213.79377 * 11 10 9 13 13 C 1.54434 * 101.59264 * 36.36541 * 12 11 10 14 14 C 1.47629 * 110.99711 * 170.00022 * 10 9 7 15 15 O 1.42938 * 110.39545 * 84.03067 * 13 12 11 16 16 C 1.44983 * 104.55966 * 98.58798 * 15 13 12 17 17 C 1.54976 * 101.84365 * 35.28556 * 16 15 13 18 18 O 1.42553 * 110.62442 * 205.76832 * 13 12 11 19 19 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.08991 * 110.36195 * 332.64064 * 11 10 9 23 23 H 1.09000 * 110.35707 * 94.94964 * 11 10 9 24 24 H 1.09002 * 111.00230 * 278.29209 * 12 11 10 25 25 H 1.08989 * 111.03704 * 154.45980 * 12 11 10 26 26 H 1.09004 * 109.91489 * 243.06684 * 14 10 9 27 27 H 1.09000 * 109.91907 * 4.36256 * 14 10 9 28 28 H 1.09008 * 110.95167 * 277.15046 * 16 15 13 29 29 H 1.08995 * 110.95584 * 153.42575 * 16 15 13 30 30 H 1.09001 * 110.69033 * 206.50476 * 17 16 15 31 31 H 1.09000 * 110.68965 * 83.31285 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 3.7149 -3.2427 1.2905 12 6 4.9093 -4.2047 1.5167 13 6 6.0833 -3.3826 0.9416 14 6 5.4571 -2.6256 -0.2388 15 8 6.5828 -2.4727 1.9243 16 6 7.7457 -3.1375 2.4790 17 6 8.3176 -3.8670 1.2370 18 8 7.1318 -4.2431 0.5032 19 1 -0.4850 0.8401 -0.0004 20 1 3.8751 -0.6798 -0.8895 21 1 3.8745 -0.6810 0.8905 22 1 3.6640 -2.5063 2.0924 23 1 2.7823 -3.8037 1.2299 24 1 4.7738 -5.1331 0.9618 25 1 5.0553 -4.4044 2.5782 26 1 5.6641 -3.1531 -1.1700 27 1 5.8582 -1.6131 -0.2855 28 1 7.4558 -3.8507 3.2508 29 1 8.4603 -2.4127 2.8687 30 1 8.8823 -4.7503 1.5353 31 1 8.9382 -3.1931 0.6464 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306474761.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:39 Heat of formation + Delta-G solvation = -73.274584 kcal Electronic energy + Delta-G solvation = -14824.767999 eV Core-core repulsion = 12299.725892 eV Total energy + Delta-G solvation = -2525.042107 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.73643 -37.23733 -35.03502 -32.81980 -30.98584 -29.45149 -27.88252 -25.98128 -23.40297 -22.20400 -20.72768 -20.04264 -17.40281 -16.73894 -16.60760 -15.36759 -15.18573 -14.53634 -14.05259 -13.72312 -13.64505 -12.85617 -12.76117 -12.48245 -12.25328 -12.16204 -11.72120 -11.41113 -11.00241 -10.89691 -10.50961 -10.37482 -10.18200 -9.82002 -9.45002 -9.21635 -8.53641 -7.40953 -6.02036 -3.99183 3.31421 3.38407 3.42161 3.43496 3.93166 4.45397 4.45834 4.68237 4.73305 4.90477 5.00432 5.19863 5.27429 5.32710 5.43962 5.67389 5.73090 5.83976 5.98016 6.04859 6.26806 6.52624 6.56890 6.79423 6.99208 7.23025 7.58004 7.87919 7.95531 8.67511 9.06989 9.59821 11.11179 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052079 B = 0.008228 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.517535 B = 3402.402583 C = 3633.402792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.156 3.844 10 N -0.511 5.511 11 C 0.063 3.937 12 C -0.150 4.150 13 C 0.235 3.765 14 C 0.038 3.962 15 O -0.361 6.361 16 C 0.013 3.987 17 C 0.019 3.981 18 O -0.370 6.370 19 H 0.263 0.737 20 H 0.024 0.976 21 H -0.006 1.006 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.251 -6.653 4.642 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.099 0.901 9 C 0.030 3.970 10 N -0.236 5.236 11 C -0.065 4.065 12 C -0.189 4.189 13 C 0.157 3.843 14 C -0.091 4.091 15 O -0.281 6.281 16 C -0.064 4.064 17 C -0.058 4.058 18 O -0.290 6.290 19 H 0.073 0.927 20 H 0.042 0.958 21 H 0.012 0.988 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.710 -6.728 4.138 17.584 hybrid contribution 0.951 1.396 0.776 1.859 sum 16.662 -5.332 4.914 18.171 Atomic orbital electron populations 1.69895 1.06091 1.26790 1.51204 1.24890 0.94744 0.98815 0.94863 0.86881 0.80402 0.84043 0.78625 1.20112 1.21163 1.19191 1.21010 0.88608 0.94813 1.50189 0.90126 1.20431 0.97272 0.84054 0.95289 1.63752 1.08762 1.19965 1.31129 1.22823 0.96905 0.95669 0.91087 1.23261 0.94975 0.99610 1.01018 1.24279 0.87644 0.84271 0.88123 1.23074 0.90041 0.99641 0.96305 1.89282 1.43711 1.41579 1.53558 1.24413 0.88052 0.97384 0.96550 1.24216 0.89143 1.00327 0.92115 1.88855 1.18649 1.57366 1.64142 0.92688 0.95776 0.98841 0.93112 0.89903 0.89289 0.90746 0.89080 0.91944 0.90736 0.87610 0.88428 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.51 -14.89 9.36 -34.44 -0.32 -15.21 16 8 H 0.08 2.55 8.01 -52.49 -0.42 2.13 16 9 C 0.16 3.98 3.40 -4.97 -0.02 3.97 16 10 N -0.51 -11.44 5.16 -232.88 -1.20 -12.64 16 11 C 0.06 1.27 6.15 -2.20 -0.01 1.25 16 12 C -0.15 -2.46 6.50 -24.90 -0.16 -2.62 16 13 C 0.23 3.93 1.27 -25.68 -0.03 3.90 16 14 C 0.04 0.73 6.42 -3.12 -0.02 0.71 16 15 O -0.36 -5.96 11.05 -59.03 -0.65 -6.61 16 16 C 0.01 0.14 7.96 38.20 0.30 0.44 16 17 C 0.02 0.20 8.08 38.20 0.31 0.51 16 18 O -0.37 -5.54 10.94 -59.03 -0.65 -6.18 16 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 20 H 0.02 0.61 7.47 -51.93 -0.39 0.23 16 21 H -0.01 -0.16 6.91 -51.93 -0.36 -0.52 16 22 H 0.05 1.09 7.62 -51.93 -0.40 0.69 16 23 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 24 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.07 1.08 8.14 -51.94 -0.42 0.65 16 26 H 0.09 1.64 8.06 -51.93 -0.42 1.22 16 27 H 0.06 1.21 7.48 -51.93 -0.39 0.82 16 28 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 254.78 15.07 3.84 3.84 Total: -1.00 -32.67 254.78 -7.10 -39.78 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.50 Total: -3.13 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.05 Total: -5.12 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: -0.43 Total: -39.93 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.30 Total: -12.80 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.67 -7.10 -39.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306474761.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.499 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds