Wall clock time and date at job start Sun Mar 29 2020 22:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.47904 * 111.00099 * 290.79851 * 10 9 7 12 12 C 1.55033 * 104.87162 * 213.79377 * 11 10 9 13 13 C 1.54434 * 101.59264 * 36.36541 * 12 11 10 14 14 C 1.47629 * 110.99711 * 170.00022 * 10 9 7 15 15 O 1.42938 * 110.39545 * 84.03067 * 13 12 11 16 16 C 1.44983 * 104.55966 * 98.58798 * 15 13 12 17 17 C 1.54976 * 101.84365 * 35.28556 * 16 15 13 18 18 O 1.42553 * 110.62442 * 205.76832 * 13 12 11 19 19 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.08991 * 110.36195 * 332.64064 * 11 10 9 23 23 H 1.09000 * 110.35707 * 94.94964 * 11 10 9 24 24 H 1.09002 * 111.00230 * 278.29209 * 12 11 10 25 25 H 1.08989 * 111.03704 * 154.45980 * 12 11 10 26 26 H 1.09004 * 109.91489 * 243.06684 * 14 10 9 27 27 H 1.09000 * 109.91907 * 4.36256 * 14 10 9 28 28 H 1.09008 * 110.95167 * 277.15046 * 16 15 13 29 29 H 1.08995 * 110.95584 * 153.42575 * 16 15 13 30 30 H 1.09001 * 110.69033 * 206.50476 * 17 16 15 31 31 H 1.09000 * 110.68965 * 83.31285 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 3.7149 -3.2427 1.2905 12 6 4.9093 -4.2047 1.5167 13 6 6.0833 -3.3826 0.9416 14 6 5.4571 -2.6256 -0.2388 15 8 6.5828 -2.4727 1.9243 16 6 7.7457 -3.1375 2.4790 17 6 8.3176 -3.8670 1.2370 18 8 7.1318 -4.2431 0.5032 19 1 -0.4850 0.8401 -0.0004 20 1 3.8751 -0.6798 -0.8895 21 1 3.8745 -0.6810 0.8905 22 1 3.6640 -2.5063 2.0924 23 1 2.7823 -3.8037 1.2299 24 1 4.7738 -5.1331 0.9618 25 1 5.0553 -4.4044 2.5782 26 1 5.6641 -3.1531 -1.1700 27 1 5.8582 -1.6131 -0.2855 28 1 7.4558 -3.8507 3.2508 29 1 8.4603 -2.4127 2.8687 30 1 8.8823 -4.7503 1.5353 31 1 8.9382 -3.1931 0.6464 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306474761.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:39 Heat of formation + Delta-G solvation = -98.732603 kcal Electronic energy + Delta-G solvation = -14825.871942 eV Core-core repulsion = 12299.725892 eV Total energy + Delta-G solvation = -2526.146049 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.90178 -38.77990 -36.14490 -34.95732 -32.64002 -30.66340 -29.54771 -27.61527 -24.43361 -23.97246 -22.06057 -21.76901 -19.04166 -18.30265 -17.86826 -16.79509 -16.37433 -16.16659 -15.61300 -15.25478 -15.07549 -14.63484 -14.23711 -13.92268 -13.72605 -13.48341 -13.17156 -12.86266 -12.67976 -12.41401 -12.19660 -12.07799 -11.84509 -11.51493 -11.18671 -10.82071 -10.62234 -9.16997 -8.31041 -6.34980 1.32512 1.33999 1.45332 2.32270 2.43986 2.74970 3.01422 3.17716 3.46351 3.68765 3.71511 4.05548 4.13164 4.28258 4.34777 4.49188 4.58010 4.68900 4.72349 4.77062 4.82244 4.86228 4.94828 5.01064 5.10253 5.47784 5.90152 6.12210 6.14717 6.52959 6.70329 7.28636 8.85592 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052079 B = 0.008228 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.517535 B = 3402.402583 C = 3633.402792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.519 4.519 8 H 0.039 0.961 9 C 0.170 3.830 10 N -0.530 5.530 11 C 0.060 3.940 12 C -0.137 4.137 13 C 0.244 3.756 14 C 0.034 3.966 15 O -0.390 6.390 16 C 0.006 3.994 17 C 0.014 3.986 18 O -0.381 6.381 19 H 0.268 0.732 20 H 0.028 0.972 21 H -0.012 1.012 22 H 0.033 0.967 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.986 -6.491 5.217 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.042 3.958 10 N -0.255 5.255 11 C -0.068 4.068 12 C -0.175 4.175 13 C 0.165 3.835 14 C -0.094 4.094 15 O -0.311 6.311 16 C -0.069 4.069 17 C -0.062 4.062 18 O -0.302 6.302 19 H 0.077 0.923 20 H 0.046 0.954 21 H 0.005 0.995 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.472 -6.591 4.715 20.172 hybrid contribution 0.123 1.245 0.616 1.394 sum 18.595 -5.346 5.331 20.070 Atomic orbital electron populations 1.70039 1.07992 1.28211 1.52277 1.25825 0.95653 1.03053 0.94194 0.85730 0.79205 0.78714 0.79433 1.18686 1.20221 1.18054 1.21204 0.90768 0.93490 1.50305 0.94290 1.20144 0.94632 0.86106 0.94880 1.63601 1.11462 1.18006 1.32462 1.22780 0.98394 0.95911 0.89668 1.23175 0.92886 0.98732 1.02680 1.23875 0.88368 0.84018 0.87197 1.23095 0.88052 1.00137 0.98166 1.89254 1.45702 1.42491 1.53668 1.24782 0.86880 0.98318 0.96920 1.24557 0.87890 1.02116 0.91632 1.88837 1.19621 1.56803 1.64933 0.92265 0.95445 0.99469 0.94900 0.91261 0.88376 0.88456 0.88292 0.92385 0.89192 0.85019 0.85071 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.22 13.96 21.45 0.30 -59.93 16 2 C 0.01 0.62 5.47 84.66 0.46 1.09 16 3 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 7 C -0.52 -31.42 9.36 25.60 0.24 -31.18 16 8 H 0.04 2.61 8.01 -2.91 -0.02 2.58 16 9 C 0.17 8.74 3.40 85.56 0.29 9.03 16 10 N -0.53 -23.98 5.16 -890.70 -4.60 -28.57 16 11 C 0.06 2.46 6.15 86.81 0.53 3.00 16 12 C -0.14 -4.26 6.50 31.78 0.21 -4.05 16 13 C 0.24 7.69 1.27 31.27 0.04 7.73 16 14 C 0.03 1.27 6.42 86.36 0.55 1.83 16 15 O -0.39 -12.00 11.05 -126.23 -1.39 -13.39 16 16 C 0.01 0.12 7.96 72.66 0.58 0.69 16 17 C 0.01 0.23 8.08 72.66 0.59 0.82 16 18 O -0.38 -10.30 10.94 -126.23 -1.38 -11.69 16 19 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 20 H 0.03 1.38 7.47 -2.39 -0.02 1.37 16 21 H -0.01 -0.64 6.91 -2.39 -0.02 -0.66 16 22 H 0.03 1.44 7.62 -2.39 -0.02 1.42 16 23 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 24 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.10 3.47 8.06 -2.39 -0.02 3.45 16 27 H 0.06 2.19 7.48 -2.39 -0.02 2.17 16 28 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -71.72 254.78 -0.65 -72.37 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.05 Total: 4.90 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 3.49 Total: -11.04 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -4.30 Total: -88.50 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -2.78 Total: -25.08 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -71.72 -0.65 -72.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306474761.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.360 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds