Wall clock time and date at job start Sun Mar 29 2020 21:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 110.32587 * 2 1 4 4 C 1.34778 * 120.00300 * 302.24105 * 3 2 1 5 5 O 1.21690 * 119.99503 * 359.97438 * 4 3 2 6 6 C 1.46374 * 120.00023 * 180.02562 * 4 3 2 7 7 H 1.08000 * 120.00237 * 359.97438 * 6 4 3 8 8 C 1.40054 * 119.99484 * 180.02562 * 6 4 3 9 9 N 1.30665 * 120.00396 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99538 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46971 * 89.99923 * 10 8 6 12 12 H 1.48500 * 109.47017 * 209.99811 * 10 8 6 13 13 H 1.48503 * 109.47263 * 330.00138 * 10 8 6 14 14 C 1.54488 * 110.36943 * 122.24144 * 2 1 3 15 15 C 1.54575 * 102.14689 * 134.29414 * 14 2 1 16 16 O 1.45839 * 104.54924 * 333.08728 * 15 14 2 17 17 C 1.34356 * 109.73827 * 30.61560 * 16 15 14 18 18 O 1.20826 * 125.05312 * 159.14485 * 17 16 15 19 19 H 1.09003 * 109.47228 * 297.75646 * 1 2 3 20 20 H 1.09002 * 109.47278 * 57.75859 * 1 2 3 21 21 H 1.09003 * 109.47319 * 177.76084 * 1 2 3 22 22 H 0.97003 * 119.99711 * 122.24004 * 3 2 1 23 23 H 0.97001 * 120.00315 * 179.97438 * 9 8 6 24 24 H 1.09000 * 110.87231 * 16.13109 * 14 2 1 25 25 H 1.09003 * 111.04610 * 252.53298 * 14 2 1 26 26 H 1.09002 * 110.44221 * 91.89084 * 15 14 2 27 27 H 1.09001 * 110.43942 * 214.28667 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0388 1.3738 0.0000 4 6 1.6890 2.2221 -0.9872 5 8 0.9509 1.8466 -1.8788 6 6 2.1980 3.5945 -0.9875 7 1 2.8534 3.9275 -0.1964 8 6 1.8340 4.4760 -2.0131 9 7 1.0406 4.0733 -2.9699 10 14 2.4829 6.2277 -2.0130 11 1 3.7650 6.2806 -2.7605 12 1 1.4928 7.1223 -2.6646 13 1 2.7068 6.6726 -0.6140 14 6 2.0677 -0.7726 1.2250 15 6 3.1702 -1.6542 0.5951 16 8 2.7478 -1.8360 -0.7889 17 6 2.0590 -0.7577 -1.1984 18 8 1.8880 -0.4403 -2.3517 19 1 -0.3634 0.4786 0.9094 20 1 -0.3634 0.5482 -0.8692 21 1 -0.3634 -1.0269 -0.0402 22 1 2.6275 1.6729 0.7106 23 1 0.7882 4.6839 -3.6801 24 1 1.2857 -1.3879 1.6700 25 1 2.4902 -0.0909 1.9632 26 1 4.1335 -1.1458 0.6355 27 1 3.2265 -2.6157 1.1054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306516187.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:53 Heat of formation + Delta-G solvation = -113.893441 kcal Electronic energy + Delta-G solvation = -14707.686903 eV Core-core repulsion = 12045.050336 eV Total energy + Delta-G solvation = -2662.636567 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.65898 -37.25847 -36.66993 -34.24902 -32.37521 -30.63678 -28.98889 -26.12002 -24.80246 -22.19528 -20.86668 -19.05513 -17.31620 -16.57689 -16.23021 -15.56348 -15.26784 -14.31228 -13.93717 -13.76694 -13.31222 -12.70588 -12.34010 -12.03410 -11.88659 -11.58884 -11.40244 -11.10389 -10.94484 -10.90867 -10.44247 -10.24997 -10.19758 -9.49397 -8.83238 -7.58948 -7.48438 -6.15467 -4.63288 2.73088 3.15302 3.21796 3.24812 3.69788 4.10325 4.40410 4.49203 4.65543 4.69431 4.82751 5.10830 5.48079 5.57986 5.76074 5.84818 6.00553 6.12443 6.27575 6.98960 7.16645 7.44141 7.79294 7.97656 8.26645 8.28682 9.03404 9.45453 10.61750 10.80206 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.051882 B = 0.009296 C = 0.008968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.554853 B = 3011.219339 C = 3121.596072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.750 5.750 4 C 0.547 3.453 5 O -0.544 6.544 6 C -0.545 4.545 7 H 0.066 0.934 8 C 0.088 3.912 9 N -0.763 5.763 10 Si 0.908 3.092 11 H -0.273 1.273 12 H -0.279 1.279 13 H -0.266 1.266 14 C -0.161 4.161 15 C 0.056 3.944 16 O -0.364 6.364 17 C 0.462 3.538 18 O -0.403 6.403 19 H 0.061 0.939 20 H 0.098 0.902 21 H 0.049 0.951 22 H 0.384 0.616 23 H 0.269 0.731 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -6.901 10.415 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 N -0.410 5.410 4 C 0.351 3.649 5 O -0.424 6.424 6 C -0.582 4.582 7 H 0.085 0.915 8 C -0.133 4.133 9 N -0.392 5.392 10 Si 0.733 3.267 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.190 1.190 14 C -0.199 4.199 15 C -0.019 4.019 16 O -0.282 6.282 17 C 0.297 3.703 18 O -0.279 6.279 19 H 0.080 0.920 20 H 0.117 0.883 21 H 0.068 0.932 22 H 0.217 0.783 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.299 -7.157 8.826 11.593 hybrid contribution 0.705 1.054 0.563 1.387 sum 3.004 -6.103 9.389 11.594 Atomic orbital electron populations 1.22084 0.92266 1.01488 1.05060 1.21090 0.96589 0.86368 0.91576 1.46403 1.55296 1.08093 1.31179 1.18345 0.81427 0.85240 0.79913 1.90655 1.38579 1.76972 1.36164 1.20812 1.31968 0.94673 1.10780 0.91538 1.25685 0.93548 0.99660 0.94360 1.70017 1.25658 1.35130 1.08361 0.86375 0.79066 0.82287 0.79013 1.19798 1.20464 1.18978 1.23243 0.99287 0.99533 0.97798 1.23948 0.97802 1.01344 0.78768 1.87095 1.68809 1.41884 1.30379 1.23851 0.76511 0.78562 0.91393 1.90808 1.53330 1.63162 1.20551 0.91966 0.88324 0.93160 0.78324 0.92059 0.88763 0.88427 0.90168 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.37 37.16 0.31 -2.54 15 2 C 0.13 2.53 0.97 -131.88 -0.13 2.40 15 3 N -0.75 -16.26 5.14 -49.06 -0.25 -16.51 15 4 C 0.55 15.40 7.16 -12.99 -0.09 15.31 15 5 O -0.54 -17.41 10.92 -16.48 -0.18 -17.59 15 6 C -0.55 -15.36 9.54 -35.63 -0.34 -15.70 15 7 H 0.07 1.70 7.85 -52.49 -0.41 1.29 15 8 C 0.09 2.46 5.50 -17.37 -0.10 2.37 15 9 N -0.76 -23.21 11.83 55.55 0.66 -22.55 15 10 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 15 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 12 H -0.28 -6.12 7.11 56.52 0.40 -5.71 15 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 14 C -0.16 -1.95 6.50 -25.12 -0.16 -2.11 15 15 C 0.06 0.67 7.89 37.98 0.30 0.97 15 16 O -0.36 -6.53 11.08 -39.24 -0.43 -6.97 15 17 C 0.46 10.19 7.31 36.32 0.27 10.46 15 18 O -0.40 -11.11 15.79 -25.84 -0.41 -11.52 15 19 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.10 2.37 6.02 -51.93 -0.31 2.06 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.38 7.01 8.19 -40.82 -0.33 6.68 15 23 H 0.27 7.44 8.29 -40.82 -0.34 7.10 15 24 H 0.09 0.94 7.81 -51.93 -0.41 0.53 15 25 H 0.10 0.98 7.66 -51.93 -0.40 0.58 15 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 15 LS Contribution 237.25 15.07 3.58 3.58 Total: -1.00 -36.96 237.25 -4.70 -41.66 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -2.69 Total: 3.51 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 0.06 Total: 11.15 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.40 Total: -39.06 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.02 Total: -36.08 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -36.96 -4.70 -41.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306516187.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.234 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds