Wall clock time and date at job start Sun Mar 29 2020 21:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 110.32587 * 2 1 4 4 C 1.34778 * 120.00300 * 302.24105 * 3 2 1 5 5 O 1.21690 * 119.99503 * 359.97438 * 4 3 2 6 6 C 1.46374 * 120.00023 * 180.02562 * 4 3 2 7 7 H 1.08000 * 120.00237 * 359.97438 * 6 4 3 8 8 C 1.40054 * 119.99484 * 180.02562 * 6 4 3 9 9 N 1.30665 * 120.00396 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 119.99538 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46971 * 89.99923 * 10 8 6 12 12 H 1.48500 * 109.47017 * 209.99811 * 10 8 6 13 13 H 1.48503 * 109.47263 * 330.00138 * 10 8 6 14 14 C 1.54488 * 110.36943 * 122.24144 * 2 1 3 15 15 C 1.54575 * 102.14689 * 134.29414 * 14 2 1 16 16 O 1.45839 * 104.54924 * 333.08728 * 15 14 2 17 17 C 1.34356 * 109.73827 * 30.61560 * 16 15 14 18 18 O 1.20826 * 125.05312 * 159.14485 * 17 16 15 19 19 H 1.09003 * 109.47228 * 297.75646 * 1 2 3 20 20 H 1.09002 * 109.47278 * 57.75859 * 1 2 3 21 21 H 1.09003 * 109.47319 * 177.76084 * 1 2 3 22 22 H 0.97003 * 119.99711 * 122.24004 * 3 2 1 23 23 H 0.97001 * 120.00315 * 179.97438 * 9 8 6 24 24 H 1.09000 * 110.87231 * 16.13109 * 14 2 1 25 25 H 1.09003 * 111.04610 * 252.53298 * 14 2 1 26 26 H 1.09002 * 110.44221 * 91.89084 * 15 14 2 27 27 H 1.09001 * 110.43942 * 214.28667 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0388 1.3738 0.0000 4 6 1.6890 2.2221 -0.9872 5 8 0.9509 1.8466 -1.8788 6 6 2.1980 3.5945 -0.9875 7 1 2.8534 3.9275 -0.1964 8 6 1.8340 4.4760 -2.0131 9 7 1.0406 4.0733 -2.9699 10 14 2.4829 6.2277 -2.0130 11 1 3.7650 6.2806 -2.7605 12 1 1.4928 7.1223 -2.6646 13 1 2.7068 6.6726 -0.6140 14 6 2.0677 -0.7726 1.2250 15 6 3.1702 -1.6542 0.5951 16 8 2.7478 -1.8360 -0.7889 17 6 2.0590 -0.7577 -1.1984 18 8 1.8880 -0.4403 -2.3517 19 1 -0.3634 0.4786 0.9094 20 1 -0.3634 0.5482 -0.8692 21 1 -0.3634 -1.0269 -0.0402 22 1 2.6275 1.6729 0.7106 23 1 0.7882 4.6839 -3.6801 24 1 1.2857 -1.3879 1.6700 25 1 2.4902 -0.0909 1.9632 26 1 4.1335 -1.1458 0.6355 27 1 3.2265 -2.6157 1.1054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306516187.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:53 Heat of formation + Delta-G solvation = -143.144184 kcal Electronic energy + Delta-G solvation = -14708.955310 eV Core-core repulsion = 12045.050336 eV Total energy + Delta-G solvation = -2663.904974 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.15840 -39.16319 -38.42455 -35.98813 -34.49244 -32.31029 -30.31413 -28.19367 -26.27421 -23.42322 -22.74968 -20.71528 -19.23976 -18.10893 -17.84876 -17.34031 -17.02380 -16.00221 -15.45396 -15.27868 -14.82872 -14.57042 -14.15856 -13.54875 -13.35585 -13.16333 -12.96358 -12.69872 -12.67025 -12.55404 -12.38005 -12.00431 -11.42951 -11.17517 -10.90260 -9.64605 -9.46913 -8.24429 -6.82944 1.07452 1.39735 1.41881 1.56622 2.24891 2.31331 2.51796 3.03593 3.08436 3.36730 3.71297 3.82923 4.10625 4.37959 4.63416 4.68333 4.70012 4.92421 4.98842 5.31824 5.38269 5.74294 5.87896 6.18295 6.25584 6.62342 6.89606 7.54483 8.55684 8.73645 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.051882 B = 0.009296 C = 0.008968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.554853 B = 3011.219339 C = 3121.596072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.123 3.877 3 N -0.737 5.737 4 C 0.531 3.469 5 O -0.591 6.591 6 C -0.575 4.575 7 H 0.090 0.910 8 C 0.026 3.974 9 N -0.824 5.824 10 Si 0.998 3.002 11 H -0.266 1.266 12 H -0.276 1.276 13 H -0.244 1.244 14 C -0.140 4.140 15 C 0.047 3.953 16 O -0.373 6.373 17 C 0.458 3.542 18 O -0.479 6.479 19 H 0.085 0.915 20 H 0.037 0.963 21 H 0.078 0.922 22 H 0.402 0.598 23 H 0.272 0.728 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 -6.987 13.690 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.033 3.967 3 N -0.397 5.397 4 C 0.334 3.666 5 O -0.475 6.475 6 C -0.612 4.612 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.453 5.453 10 Si 0.818 3.182 11 H -0.191 1.191 12 H -0.201 1.201 13 H -0.167 1.167 14 C -0.177 4.177 15 C -0.026 4.026 16 O -0.290 6.290 17 C 0.296 3.704 18 O -0.361 6.361 19 H 0.104 0.896 20 H 0.056 0.944 21 H 0.097 0.903 22 H 0.239 0.761 23 H 0.082 0.918 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.112 0.888 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.800 -7.289 12.207 14.717 hybrid contribution 0.278 0.923 -0.359 1.028 sum 4.078 -6.366 11.849 14.055 Atomic orbital electron populations 1.22002 0.92621 1.02548 1.03298 1.21433 0.96538 0.85027 0.93692 1.45934 1.54819 1.08899 1.30045 1.18688 0.81010 0.86388 0.80506 1.90642 1.40401 1.78101 1.38307 1.21437 1.32523 0.95419 1.11785 0.89227 1.26982 0.93198 1.05300 0.93372 1.70218 1.27938 1.37478 1.09696 0.85020 0.78158 0.74995 0.80076 1.19124 1.20057 1.16685 1.23323 1.00041 0.99332 0.95033 1.24563 0.98044 1.04344 0.75625 1.87057 1.67773 1.40118 1.34076 1.24494 0.75674 0.78981 0.91242 1.90764 1.56117 1.65575 1.23631 0.89602 0.94380 0.90342 0.76139 0.91848 0.85341 0.85253 0.88828 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 8.37 71.98 0.60 -4.88 15 2 C 0.12 4.46 0.97 3.56 0.00 4.46 15 3 N -0.74 -31.48 5.14 -427.34 -2.20 -33.67 15 4 C 0.53 30.74 7.16 86.36 0.62 31.36 15 5 O -0.59 -40.04 10.92 16.42 0.18 -39.86 15 6 C -0.57 -32.70 9.54 24.83 0.24 -32.46 15 7 H 0.09 4.47 7.85 -2.91 -0.02 4.45 15 8 C 0.03 1.49 5.50 85.31 0.47 1.95 15 9 N -0.82 -52.27 11.83 21.84 0.26 -52.01 15 10 Si 1.00 41.76 29.56 68.60 2.03 43.79 15 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 12 H -0.28 -11.22 7.11 99.48 0.71 -10.52 15 13 H -0.24 -9.25 7.11 99.48 0.71 -8.54 15 14 C -0.14 -2.69 6.50 31.64 0.21 -2.48 15 15 C 0.05 0.90 7.89 72.52 0.57 1.47 15 16 O -0.37 -12.78 11.08 -52.98 -0.59 -13.37 15 17 C 0.46 20.44 7.31 71.44 0.52 20.96 15 18 O -0.48 -28.06 15.79 28.74 0.45 -27.61 15 19 H 0.09 2.72 8.14 -2.39 -0.02 2.70 15 20 H 0.04 1.91 6.02 -2.39 -0.01 1.89 15 21 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.40 13.78 8.19 -92.71 -0.76 13.02 15 23 H 0.27 15.74 8.29 -92.71 -0.77 14.98 15 24 H 0.13 1.71 7.81 -2.39 -0.02 1.69 15 25 H 0.13 1.76 7.66 -2.39 -0.02 1.74 15 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 27 H 0.15 1.51 8.14 -2.39 -0.02 1.49 15 Total: -1.00 -89.37 237.25 3.81 -85.56 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.44 Total: 16.78 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 3.23 Total: 20.39 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.94 Total: -85.69 kcal Atomic # 8 Polarization: -80.88 SS G_CDS: 0.05 Total: -80.84 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -89.37 3.81 -85.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306516187.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.585 kcal (2) G-P(sol) polarization free energy of solvation -89.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds