Wall clock time and date at job start Sun Mar 29 2020 22:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48499 * 109.47196 * 239.99945 * 3 2 1 5 5 H 1.48507 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47360 * 119.99620 * 3 2 1 7 7 C 1.40040 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00268 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99731 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00082 * 179.97438 * 9 7 2 12 12 C 1.44575 * 118.64704 * 0.02562 * 11 9 7 13 13 C 1.54867 * 109.59614 * 270.74737 * 12 11 9 14 14 C 1.47094 * 110.32132 * 288.72977 * 13 12 11 15 15 C 1.52569 * 114.20682 * 62.87963 * 14 13 12 16 16 H 1.08998 * 109.48741 * 34.87798 * 15 14 13 17 17 O 1.42898 * 109.48760 * 154.94490 * 15 14 13 18 18 C 1.51028 * 109.27958 * 274.78244 * 15 14 13 19 19 C 1.47608 * 118.64092 * 180.02562 * 11 9 7 20 20 H 0.96998 * 120.00159 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.45266 * 150.70790 * 12 11 9 22 22 H 1.09002 * 109.44855 * 30.78113 * 12 11 9 23 23 H 1.09000 * 109.32579 * 168.46820 * 13 12 11 24 24 H 1.08996 * 109.19184 * 48.90276 * 13 12 11 25 25 H 1.09002 * 108.51267 * 184.05828 * 14 13 12 26 26 H 1.09004 * 108.51274 * 301.70694 * 14 13 12 27 27 H 0.96699 * 114.00186 * 180.02562 * 17 15 14 28 28 H 1.09004 * 109.44531 * 331.90231 * 18 15 14 29 29 H 1.09004 * 109.41469 * 212.21434 * 18 15 14 30 30 H 1.09001 * 108.94789 * 258.53674 * 19 11 9 31 31 H 1.09001 * 108.94709 * 17.25410 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0943 1.6966 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0005 12 6 3.3945 -3.6134 0.0011 13 6 3.9138 -3.5817 -1.4575 14 6 3.6990 -4.8851 -2.1047 15 6 2.2323 -5.2847 -2.2347 16 1 1.6278 -4.3959 -2.4154 17 8 2.0811 -6.1947 -3.3261 18 6 1.7825 -5.9533 -0.9573 19 6 1.1811 -4.9081 0.0000 20 1 -0.4850 0.8400 -0.0004 21 1 3.7784 -4.5009 0.5039 22 1 3.7362 -2.7221 0.5274 23 1 4.9791 -3.3508 -1.4562 24 1 3.3784 -2.8110 -2.0119 25 1 4.1387 -4.8532 -3.1016 26 1 4.2157 -5.6492 -1.5240 27 1 1.1717 -6.4913 -3.4678 28 1 2.6364 -6.4327 -0.4785 29 1 1.0299 -6.7072 -1.1884 30 1 1.1715 -5.3172 1.0102 31 1 0.1562 -4.6980 -0.3062 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306526881.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:13 Heat of formation + Delta-G solvation = -118.783697 kcal Electronic energy + Delta-G solvation = -15018.485062 eV Core-core repulsion = 12491.469532 eV Total energy + Delta-G solvation = -2527.015530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67190 -38.59310 -36.51006 -34.74996 -33.63838 -32.85227 -28.51374 -27.13842 -25.67991 -23.09526 -21.42898 -20.55461 -18.58743 -18.05950 -17.60871 -16.85720 -16.21996 -15.89812 -15.33589 -15.00953 -14.44363 -14.31394 -14.05111 -13.67122 -13.25374 -12.93921 -12.71234 -12.67177 -12.41819 -12.12380 -12.03136 -11.75521 -11.58405 -11.33429 -10.92616 -10.88323 -9.75656 -9.03025 -8.26827 -6.81001 1.39910 1.43014 1.54166 2.24337 2.47262 2.86325 3.23864 3.61901 3.82050 3.98323 4.13830 4.21449 4.32908 4.48801 4.60595 4.80030 4.84677 4.95961 4.98346 5.07450 5.17770 5.22752 5.29846 5.40581 5.52891 5.85899 6.21218 6.44009 6.82644 6.90191 7.45985 8.49550 8.69477 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041185 B = 0.009835 C = 0.008995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.695562 B = 2846.357616 C = 3111.992555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.639 5.639 12 C 0.125 3.875 13 C -0.130 4.130 14 C -0.101 4.101 15 C 0.112 3.888 16 H 0.019 0.981 17 O -0.580 6.580 18 C -0.143 4.143 19 C 0.119 3.881 20 H 0.272 0.728 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.390 0.610 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 -7.933 -2.142 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.600 4.600 8 H 0.113 0.887 9 C 0.341 3.659 10 O -0.524 6.524 11 N -0.374 5.374 12 C 0.001 3.999 13 C -0.169 4.169 14 C -0.138 4.138 15 C 0.053 3.947 16 H 0.037 0.963 17 O -0.388 6.388 18 C -0.181 4.181 19 C -0.004 4.004 20 H 0.082 0.918 21 H 0.101 0.899 22 H 0.090 0.910 23 H 0.117 0.883 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.239 0.761 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.868 -7.804 -2.172 12.011 hybrid contribution -0.891 0.743 0.055 1.161 sum 7.977 -7.061 -2.117 10.862 Atomic orbital electron populations 1.70197 1.09557 1.28782 1.36808 1.26989 0.95445 1.04953 0.91333 0.85166 0.78311 0.75060 0.80398 1.17809 1.20249 1.17594 1.21510 0.94890 0.89671 1.53895 0.88690 1.18733 0.86634 0.84580 0.75962 1.90531 1.16499 1.87668 1.57667 1.47629 1.06479 1.04855 1.78457 1.21436 0.79885 1.02396 0.96196 1.21184 1.02124 0.96731 0.96885 1.20295 0.93818 0.98116 1.01596 1.21154 0.97689 0.90201 0.85644 0.96290 1.86417 1.34784 1.65329 1.52287 1.22427 1.02548 0.97474 0.95677 1.21433 0.95574 0.84806 0.98596 0.91792 0.89908 0.90986 0.88280 0.94394 0.91778 0.89972 0.76058 0.89357 0.88926 0.92874 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.80 11.83 21.83 0.26 -50.55 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 0.99 40.84 29.56 68.60 2.03 42.87 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.56 -31.47 8.67 24.83 0.22 -31.25 16 8 H 0.10 4.70 5.92 -2.91 -0.02 4.69 16 9 C 0.53 30.99 7.56 86.36 0.65 31.65 16 10 O -0.64 -42.95 14.30 -4.31 -0.06 -43.01 16 11 N -0.64 -28.59 2.23 -823.23 -1.84 -30.43 16 12 C 0.12 4.38 5.08 87.38 0.44 4.82 16 13 C -0.13 -4.11 5.73 29.40 0.17 -3.95 16 14 C -0.10 -2.91 4.86 28.61 0.14 -2.77 16 15 C 0.11 3.58 3.08 29.81 0.09 3.67 16 16 H 0.02 0.78 7.48 -2.39 -0.02 0.76 16 17 O -0.58 -16.49 13.22 -148.98 -1.97 -18.46 16 18 C -0.14 -4.10 5.43 30.28 0.16 -3.93 16 19 C 0.12 4.62 6.10 86.49 0.53 5.15 16 20 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 21 H 0.08 2.35 8.06 -2.39 -0.02 2.33 16 22 H 0.07 2.67 5.95 -2.39 -0.01 2.66 16 23 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 26 H 0.08 1.98 7.35 -2.38 -0.02 1.96 16 27 H 0.39 8.07 8.95 -74.06 -0.66 7.41 16 28 H 0.09 2.16 7.31 -2.38 -0.02 2.14 16 29 H 0.09 2.23 7.90 -2.38 -0.02 2.21 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 2.06 6.95 -2.39 -0.02 2.04 16 Total: -1.00 -76.19 251.12 1.76 -74.42 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.47 Total: 19.76 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 2.87 Total: 5.40 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.58 Total: -80.97 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -2.03 Total: -61.47 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -76.19 1.76 -74.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306526881.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.360 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds