Wall clock time and date at job start Sun Mar 29 2020 22:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 120.00008 * 2 1 4 4 H 1.48500 * 109.46885 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46699 * 120.00018 * 3 2 1 6 6 H 1.48500 * 109.47303 * 240.00190 * 3 2 1 7 7 C 1.40039 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00368 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00065 * 359.97438 * 7 2 1 10 10 O 1.21681 * 119.99725 * 354.71001 * 9 7 2 11 11 N 1.34772 * 119.99986 * 174.70012 * 9 7 2 12 12 C 1.47601 * 118.64260 * 184.40855 * 11 9 7 13 13 C 1.53610 * 112.34257 * 222.04067 * 12 11 9 14 14 C 1.50884 * 109.94890 * 40.83079 * 13 12 11 15 15 C 1.52567 * 109.36104 * 268.02394 * 14 13 12 16 16 H 1.09001 * 108.51071 * 323.76216 * 15 14 13 17 17 O 1.42897 * 108.51275 * 206.26632 * 15 14 13 18 18 C 1.47092 * 114.32419 * 85.01421 * 15 14 13 19 19 C 1.44578 * 118.64871 * 4.68016 * 11 9 7 20 20 H 0.97003 * 120.00240 * 0.02562 * 1 2 3 21 21 H 1.09005 * 108.94918 * 342.84082 * 12 11 9 22 22 H 1.09001 * 108.95087 * 101.47132 * 12 11 9 23 23 H 1.08996 * 109.50848 * 280.64062 * 13 12 11 24 24 H 1.08999 * 109.26248 * 160.86837 * 13 12 11 25 25 H 1.09008 * 109.48478 * 148.06079 * 14 13 12 26 26 H 1.09001 * 109.49091 * 27.99757 * 14 13 12 27 27 H 0.96699 * 114.00108 * 175.23427 * 17 15 14 28 28 H 1.08996 * 109.33269 * 176.93768 * 18 15 14 29 29 H 1.09007 * 109.19147 * 57.37253 * 18 15 14 30 30 H 1.08994 * 109.45748 * 209.28967 * 19 11 9 31 31 H 1.09009 * 109.44335 * 329.20994 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0944 1.6963 1.2125 6 1 3.0945 1.6965 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0622 -2.4827 0.0971 11 7 1.9446 -3.6451 -0.1089 12 6 1.1720 -4.8991 -0.2049 13 6 1.7783 -6.0252 0.6458 14 6 2.2434 -5.4753 1.9717 15 6 3.7093 -5.0666 1.8637 16 1 4.2201 -5.7785 1.2152 17 8 4.2980 -5.1406 3.1637 18 6 3.9231 -3.7124 1.3306 19 6 3.3900 -3.6152 -0.1202 20 1 -0.4851 0.8401 -0.0004 21 1 0.1516 -4.7127 0.1303 22 1 1.1475 -5.2209 -1.2461 23 1 2.6259 -6.4634 0.1190 24 1 1.0235 -6.7925 0.8175 25 1 2.1348 -6.2401 2.7408 26 1 1.6418 -4.6055 2.2359 27 1 5.2492 -4.9669 3.1752 28 1 4.9891 -3.4854 1.3392 29 1 3.3960 -2.9932 1.9576 30 1 3.7660 -4.4566 -0.7021 31 1 3.7302 -2.6824 -0.5701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306526882.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:15 Heat of formation + Delta-G solvation = -92.283296 kcal Electronic energy + Delta-G solvation = -15008.733807 eV Core-core repulsion = 12482.867421 eV Total energy + Delta-G solvation = -2525.866386 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13923 -36.99456 -34.79256 -32.59562 -32.41945 -30.90587 -26.80562 -25.43049 -24.18545 -21.38290 -20.12013 -18.75866 -17.09271 -16.58987 -15.65355 -14.86629 -14.67971 -14.22199 -14.19941 -13.64297 -12.87756 -12.57032 -12.05007 -11.99047 -11.48312 -11.16219 -11.06958 -10.96823 -10.91174 -10.68071 -10.40584 -10.24169 -10.14597 -9.92031 -9.54694 -8.84800 -7.57407 -7.18812 -6.19260 -4.64375 3.14765 3.20068 3.21420 4.08372 4.43492 4.56666 4.59607 5.05558 5.28106 5.49791 5.59266 5.63826 5.70344 5.84406 5.99535 6.11479 6.18899 6.30630 6.41722 6.44996 6.58445 6.67140 6.77616 6.86854 7.44767 7.74179 7.88315 8.15623 8.33550 9.02339 9.43602 10.58010 10.76572 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036628 B = 0.010421 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.267758 B = 2686.194808 C = 3146.403447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.554 3.446 10 O -0.579 6.579 11 N -0.639 5.639 12 C 0.118 3.882 13 C -0.126 4.126 14 C -0.107 4.107 15 C 0.118 3.882 16 H 0.038 0.962 17 O -0.578 6.578 18 C -0.175 4.175 19 C 0.137 3.863 20 H 0.269 0.731 21 H 0.082 0.918 22 H 0.038 0.962 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.370 0.630 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.711 -7.384 0.913 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.376 5.376 12 C -0.006 4.006 13 C -0.165 4.165 14 C -0.144 4.144 15 C 0.060 3.940 16 H 0.056 0.944 17 O -0.383 6.383 18 C -0.214 4.214 19 C 0.011 3.989 20 H 0.079 0.921 21 H 0.101 0.899 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.216 0.784 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.225 -7.435 1.110 10.426 hybrid contribution 1.223 0.916 -0.163 1.537 sum 8.448 -6.519 0.947 10.713 Atomic orbital electron populations 1.70005 1.07068 1.27372 1.35205 1.25734 0.94590 1.00280 0.92614 0.86479 0.79892 0.81235 0.79440 1.20574 1.19255 1.19280 1.20978 0.93613 0.89265 1.54154 0.90949 1.18297 0.86998 0.82494 0.76206 1.90580 1.14540 1.86254 1.54768 1.47736 1.04565 1.05992 1.79329 1.21336 0.97414 0.84584 0.97217 1.21635 1.00626 0.98238 0.95968 1.20968 0.94248 1.01849 0.97361 1.20767 0.94191 0.95987 0.83048 0.94419 1.86562 1.26311 1.94359 1.31115 1.22055 1.00829 0.98156 1.00364 1.21031 0.82654 1.01655 0.93528 0.92062 0.89943 0.94377 0.92431 0.91294 0.91794 0.90410 0.78417 0.92016 0.90029 0.93402 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.99 11.84 55.55 0.66 -22.34 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.90 20.02 29.56 -169.99 -5.02 14.99 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.54 -15.06 8.67 -35.63 -0.31 -15.37 16 8 H 0.07 1.82 5.89 -52.49 -0.31 1.51 16 9 C 0.55 15.66 7.54 -12.99 -0.10 15.56 16 10 O -0.58 -18.70 14.31 5.21 0.07 -18.63 16 11 N -0.64 -14.35 2.25 -174.41 -0.39 -14.74 16 12 C 0.12 2.32 6.09 -3.12 -0.02 2.30 16 13 C -0.13 -1.96 5.71 -27.48 -0.16 -2.12 16 14 C -0.11 -1.81 5.15 -28.02 -0.14 -1.95 16 15 C 0.12 1.84 2.87 -29.79 -0.09 1.75 16 16 H 0.04 0.53 7.36 -51.93 -0.38 0.14 16 17 O -0.58 -8.71 13.16 -35.23 -0.46 -9.17 16 18 C -0.17 -2.93 5.23 -28.58 -0.15 -3.08 16 19 C 0.14 2.53 5.16 -4.08 -0.02 2.51 16 20 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 21 H 0.08 1.84 6.91 -51.93 -0.36 1.48 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.80 7.32 -51.93 -0.38 0.42 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.01 8.07 -51.92 -0.42 0.60 16 26 H 0.08 1.60 7.48 -51.93 -0.39 1.21 16 27 H 0.37 3.84 9.04 45.56 0.41 4.26 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.05 0.75 8.07 -51.93 -0.42 0.34 16 31 H 0.09 1.66 5.82 -51.92 -0.30 1.35 16 LS Contribution 251.18 15.07 3.79 3.79 Total: -1.00 -33.99 251.18 -5.81 -39.81 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.37 Total: 4.35 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.08 Total: 1.94 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.27 Total: -37.07 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.39 Total: -27.80 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.99 -5.81 -39.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306526882.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.476 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds