Wall clock time and date at job start Sun Mar 29 2020 22:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 120.00008 * 2 1 4 4 H 1.48500 * 109.46885 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46699 * 120.00018 * 3 2 1 6 6 H 1.48500 * 109.47303 * 240.00190 * 3 2 1 7 7 C 1.40039 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00368 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00065 * 359.97438 * 7 2 1 10 10 O 1.21681 * 119.99725 * 354.71001 * 9 7 2 11 11 N 1.34772 * 119.99986 * 174.70012 * 9 7 2 12 12 C 1.47601 * 118.64260 * 184.40855 * 11 9 7 13 13 C 1.53610 * 112.34257 * 222.04067 * 12 11 9 14 14 C 1.50884 * 109.94890 * 40.83079 * 13 12 11 15 15 C 1.52567 * 109.36104 * 268.02394 * 14 13 12 16 16 H 1.09001 * 108.51071 * 323.76216 * 15 14 13 17 17 O 1.42897 * 108.51275 * 206.26632 * 15 14 13 18 18 C 1.47092 * 114.32419 * 85.01421 * 15 14 13 19 19 C 1.44578 * 118.64871 * 4.68016 * 11 9 7 20 20 H 0.97003 * 120.00240 * 0.02562 * 1 2 3 21 21 H 1.09005 * 108.94918 * 342.84082 * 12 11 9 22 22 H 1.09001 * 108.95087 * 101.47132 * 12 11 9 23 23 H 1.08996 * 109.50848 * 280.64062 * 13 12 11 24 24 H 1.08999 * 109.26248 * 160.86837 * 13 12 11 25 25 H 1.09008 * 109.48478 * 148.06079 * 14 13 12 26 26 H 1.09001 * 109.49091 * 27.99757 * 14 13 12 27 27 H 0.96699 * 114.00108 * 175.23427 * 17 15 14 28 28 H 1.08996 * 109.33269 * 176.93768 * 18 15 14 29 29 H 1.09007 * 109.19147 * 57.37253 * 18 15 14 30 30 H 1.08994 * 109.45748 * 209.28967 * 19 11 9 31 31 H 1.09009 * 109.44335 * 329.20994 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0944 1.6963 1.2125 6 1 3.0945 1.6965 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0622 -2.4827 0.0971 11 7 1.9446 -3.6451 -0.1089 12 6 1.1720 -4.8991 -0.2049 13 6 1.7783 -6.0252 0.6458 14 6 2.2434 -5.4753 1.9717 15 6 3.7093 -5.0666 1.8637 16 1 4.2201 -5.7785 1.2152 17 8 4.2980 -5.1406 3.1637 18 6 3.9231 -3.7124 1.3306 19 6 3.3900 -3.6152 -0.1202 20 1 -0.4851 0.8401 -0.0004 21 1 0.1516 -4.7127 0.1303 22 1 1.1475 -5.2209 -1.2461 23 1 2.6259 -6.4634 0.1190 24 1 1.0235 -6.7925 0.8175 25 1 2.1348 -6.2401 2.7408 26 1 1.6418 -4.6055 2.2359 27 1 5.2492 -4.9669 3.1752 28 1 4.9891 -3.4854 1.3392 29 1 3.3960 -2.9932 1.9576 30 1 3.7660 -4.4566 -0.7021 31 1 3.7302 -2.6824 -0.5701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306526882.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:15 Heat of formation + Delta-G solvation = -118.811750 kcal Electronic energy + Delta-G solvation = -15009.884167 eV Core-core repulsion = 12482.867421 eV Total energy + Delta-G solvation = -2527.016746 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69149 -38.66787 -36.44478 -34.67227 -33.97862 -32.40255 -28.77166 -27.07468 -25.67238 -23.08812 -21.46305 -20.50589 -18.44294 -18.37894 -17.64910 -16.39475 -16.32120 -15.85570 -15.67298 -15.16057 -14.45846 -14.19604 -13.84272 -13.59870 -13.13150 -12.85504 -12.70983 -12.57485 -12.39171 -12.18978 -12.08507 -12.05513 -11.66859 -11.30778 -10.91373 -10.77614 -9.76258 -9.02740 -8.27880 -6.82210 1.38505 1.42138 1.53306 2.23584 2.46539 2.88190 3.35073 3.63928 3.75669 3.98916 4.16022 4.22864 4.35159 4.48583 4.62506 4.73665 4.86020 4.91722 4.99132 5.08044 5.13341 5.26021 5.34035 5.37836 5.49173 5.85258 6.20533 6.44883 6.88997 6.97319 7.45891 8.49318 8.68968 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036628 B = 0.010421 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.267758 B = 2686.194808 C = 3146.403447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.993 3.007 4 H -0.277 1.277 5 H -0.256 1.256 6 H -0.250 1.250 7 C -0.566 4.566 8 H 0.095 0.905 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.638 5.638 12 C 0.114 3.886 13 C -0.111 4.111 14 C -0.108 4.108 15 C 0.120 3.880 16 H 0.074 0.926 17 O -0.592 6.592 18 C -0.165 4.165 19 C 0.129 3.871 20 H 0.273 0.727 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.391 0.609 28 H 0.099 0.901 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.893 -8.187 0.580 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.180 1.180 6 H -0.174 1.174 7 C -0.602 4.602 8 H 0.113 0.887 9 C 0.341 3.659 10 O -0.524 6.524 11 N -0.373 5.373 12 C -0.009 4.009 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.062 3.938 16 H 0.092 0.908 17 O -0.401 6.401 18 C -0.204 4.204 19 C 0.005 3.995 20 H 0.082 0.918 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.241 0.759 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.480 -8.289 0.776 13.385 hybrid contribution 0.246 1.074 -0.042 1.103 sum 10.726 -7.215 0.734 12.948 Atomic orbital electron populations 1.70199 1.09605 1.28822 1.36852 1.27011 0.95463 1.05022 0.91292 0.85146 0.78298 0.74961 0.80389 1.20192 1.17977 1.17358 1.21503 0.94839 0.89766 1.54095 0.88749 1.18735 0.86608 0.84652 0.75889 1.90526 1.16973 1.87614 1.57302 1.47598 1.06407 1.05407 1.77899 1.21492 0.95589 0.84868 0.98975 1.21567 1.02206 0.96677 0.94495 1.20969 0.95025 1.00140 0.98496 1.20688 0.93433 0.95780 0.83913 0.90782 1.86525 1.28410 1.94344 1.30810 1.21974 1.02316 0.98003 0.98093 1.21293 0.80011 1.02847 0.95323 0.91765 0.94047 0.92801 0.88970 0.89159 0.90635 0.95528 0.75902 0.88240 0.94678 0.89361 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.53 11.84 21.83 0.26 -51.27 16 2 C 0.03 1.51 5.50 85.30 0.47 1.98 16 3 Si 0.99 41.23 29.56 68.60 2.03 43.26 16 4 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 7 C -0.57 -32.04 8.67 24.83 0.22 -31.83 16 8 H 0.09 4.73 5.89 -2.91 -0.02 4.71 16 9 C 0.54 31.54 7.54 86.36 0.65 32.19 16 10 O -0.64 -43.80 14.31 -4.29 -0.06 -43.86 16 11 N -0.64 -28.89 2.25 -823.92 -1.85 -30.74 16 12 C 0.11 4.48 6.09 86.37 0.53 5.01 16 13 C -0.11 -3.18 5.71 30.11 0.17 -3.01 16 14 C -0.11 -3.54 5.15 29.76 0.15 -3.38 16 15 C 0.12 3.35 2.87 28.61 0.08 3.43 16 16 H 0.07 1.61 7.36 -2.39 -0.02 1.60 16 17 O -0.59 -16.01 13.16 -148.98 -1.96 -17.97 16 18 C -0.16 -5.15 5.23 29.39 0.15 -4.99 16 19 C 0.13 4.49 5.16 87.38 0.45 4.95 16 20 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 21 H 0.04 1.95 6.91 -2.38 -0.02 1.94 16 22 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.09 2.06 7.32 -2.39 -0.02 2.04 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.08 2.26 8.07 -2.38 -0.02 2.24 16 26 H 0.03 1.12 7.48 -2.39 -0.02 1.10 16 27 H 0.39 6.58 9.04 -74.06 -0.67 5.91 16 28 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 31 H 0.07 2.75 5.82 -2.38 -0.01 2.74 16 Total: -1.00 -79.49 251.18 1.75 -77.74 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.47 Total: 18.49 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 2.87 Total: 4.34 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.59 Total: -82.01 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: -2.02 Total: -61.82 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -79.49 1.75 -77.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306526882.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.072 kcal (2) G-P(sol) polarization free energy of solvation -79.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds