Wall clock time and date at job start Sun Mar 29 2020 21:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29413 * 125.69594 * 2 1 4 4 N 1.26393 * 116.47939 * 180.02562 * 3 2 1 5 5 C 1.29421 * 116.47333 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.69785 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47290 * 165.02399 * 6 5 4 8 8 C 1.53006 * 109.47149 * 285.03064 * 6 5 4 9 9 N 1.46505 * 109.46982 * 45.02468 * 6 5 4 10 10 C 1.36931 * 119.99788 * 155.00096 * 9 6 5 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 6 12 12 C 1.38817 * 119.99680 * 179.72358 * 10 9 6 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48496 * 109.47141 * 59.99751 * 14 12 10 16 16 H 1.48490 * 109.47071 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00028 * 14 12 10 18 18 S 1.71216 * 125.69560 * 180.30543 * 2 1 3 19 19 H 1.08996 * 109.47225 * 89.97815 * 1 2 3 20 20 H 1.09006 * 109.46856 * 209.97586 * 1 2 3 21 21 H 1.08992 * 109.47362 * 329.97228 * 1 2 3 22 22 H 1.08991 * 109.47054 * 180.02562 * 8 6 5 23 23 H 1.09004 * 109.46242 * 299.99510 * 8 6 5 24 24 H 1.08994 * 109.47567 * 59.99505 * 8 6 5 25 25 H 0.97000 * 119.99792 * 334.99891 * 9 6 5 26 26 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8486 -0.0005 5 6 3.8937 -0.3874 -0.0004 6 6 5.3233 -0.8641 -0.0015 7 1 5.3542 -1.9207 0.2643 8 6 5.9243 -0.6710 -1.3953 9 7 6.0962 -0.0921 0.9747 10 6 7.2265 -0.6284 1.5313 11 1 7.5485 -1.6203 1.2504 12 6 7.9620 0.1054 2.4520 13 7 7.5700 1.3143 2.7939 14 14 9.5083 -0.6232 3.2055 15 1 10.4849 -0.9318 2.1303 16 1 10.1052 0.3532 4.1518 17 1 9.1636 -1.8705 3.9340 18 16 2.5061 -1.3905 -0.0074 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3633 -0.8903 0.5135 21 1 -0.3634 0.8897 0.5142 22 1 6.9581 -1.0162 -1.3962 23 1 5.3492 -1.2454 -2.1216 24 1 5.8934 0.3856 -1.6612 25 1 5.8072 0.7989 1.2267 26 1 8.0837 1.8269 3.4376 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306528769.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:09 Heat of formation + Delta-G solvation = 68.744976 kcal Electronic energy + Delta-G solvation = -11840.542549 eV Core-core repulsion = 9660.871400 eV Total energy + Delta-G solvation = -2179.671149 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.88724 -35.88188 -32.91699 -31.78158 -28.95518 -27.84281 -25.16201 -23.90898 -21.86126 -19.06034 -18.73917 -17.29016 -15.59573 -15.22251 -14.43890 -13.95615 -13.56523 -13.23909 -12.92115 -12.72994 -12.46174 -12.28686 -11.56066 -10.95746 -10.89960 -10.81656 -10.23665 -10.03241 -9.93175 -9.67879 -9.38677 -9.24790 -8.97049 -7.09606 -5.82764 -3.13254 0.79343 1.22516 1.69946 2.97832 3.40992 3.44913 3.46723 4.29362 4.52901 4.91885 5.06921 5.32749 5.46100 5.50269 5.66739 5.74795 5.87577 6.02522 6.11229 6.43871 6.56430 6.92242 7.60571 8.32588 8.97849 9.45297 9.97459 10.35246 11.38387 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.054864 B = 0.007585 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.234201 B = 3690.740618 C = 3834.891463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.040 4.040 3 N -0.261 5.261 4 N -0.255 5.255 5 C 0.016 3.984 6 C 0.250 3.750 7 H 0.069 0.931 8 C -0.159 4.159 9 N -0.708 5.708 10 C -0.251 4.251 11 H 0.075 0.925 12 C -0.006 4.006 13 N -0.922 5.922 14 Si 0.912 3.088 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.284 1.284 18 S 0.132 5.868 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.395 0.605 26 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.826 -6.996 -6.590 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.319 4.319 3 N -0.099 5.099 4 N -0.091 5.091 5 C -0.265 4.265 6 C 0.135 3.865 7 H 0.087 0.913 8 C -0.221 4.221 9 N -0.351 5.351 10 C -0.382 4.382 11 H 0.093 0.907 12 C -0.204 4.204 13 N -0.568 5.568 14 Si 0.742 3.258 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.211 1.211 18 S 0.376 5.624 19 H 0.103 0.897 20 H 0.099 0.901 21 H 0.107 0.893 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.230 0.770 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.632 -6.695 -6.500 14.912 hybrid contribution 0.763 0.075 0.603 0.975 sum -10.870 -6.620 -5.896 14.026 Atomic orbital electron populations 1.20267 0.84553 1.04207 1.03715 1.29070 1.03824 0.92213 1.06811 1.71436 0.97425 1.27017 1.13989 1.71356 1.05460 1.17179 1.15070 1.30289 1.03405 0.91908 1.00855 1.18875 0.80092 0.95464 0.92047 0.91316 1.22447 1.01425 1.01970 0.96222 1.42463 1.27092 1.17603 1.47908 1.19210 1.00087 0.99834 1.19076 0.90738 1.24823 0.99500 0.96420 0.99643 1.69696 1.40517 1.10596 1.36032 0.86209 0.82816 0.77920 0.78845 1.21002 1.21572 1.21095 1.83493 0.98889 1.13196 1.66838 0.89701 0.90146 0.89258 0.91215 0.94182 0.92374 0.76964 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.49 36.01 0.38 -0.27 15 2 C -0.04 -0.59 7.53 -13.29 -0.10 -0.69 15 3 N -0.26 -5.04 11.66 32.58 0.38 -4.66 15 4 N -0.25 -5.48 11.32 32.58 0.37 -5.11 15 5 C 0.02 0.31 6.34 -13.30 -0.08 0.22 15 6 C 0.25 5.15 3.41 -69.08 -0.24 4.91 15 7 H 0.07 1.32 8.08 -51.93 -0.42 0.90 15 8 C -0.16 -2.92 9.47 37.16 0.35 -2.57 15 9 N -0.71 -18.38 5.11 -54.55 -0.28 -18.66 15 10 C -0.25 -6.91 9.93 -15.06 -0.15 -7.06 15 11 H 0.07 1.92 7.83 -52.49 -0.41 1.51 15 12 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 15 13 N -0.92 -28.27 13.06 55.49 0.72 -27.55 15 14 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 18 S 0.13 1.93 23.04 -107.50 -2.48 -0.55 15 19 H 0.08 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 25 H 0.39 11.32 7.52 -40.82 -0.31 11.02 15 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 LS Contribution 248.32 15.07 3.74 3.74 Total: -1.00 -32.15 248.32 -5.31 -37.46 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.81 Total: 3.98 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 0.06 Total: -5.73 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 1.19 Total: -55.98 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.48 Total: -0.55 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.15 -5.31 -37.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306528769.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.206 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds