Wall clock time and date at job start Sun Mar 29 2020 21:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29413 * 125.69594 * 2 1 4 4 N 1.26393 * 116.47939 * 180.02562 * 3 2 1 5 5 C 1.29421 * 116.47333 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.69785 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47290 * 165.02399 * 6 5 4 8 8 C 1.53006 * 109.47149 * 285.03064 * 6 5 4 9 9 N 1.46505 * 109.46982 * 45.02468 * 6 5 4 10 10 C 1.36931 * 119.99788 * 155.00096 * 9 6 5 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 6 12 12 C 1.38817 * 119.99680 * 179.72358 * 10 9 6 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48496 * 109.47141 * 59.99751 * 14 12 10 16 16 H 1.48490 * 109.47071 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00028 * 14 12 10 18 18 S 1.71216 * 125.69560 * 180.30543 * 2 1 3 19 19 H 1.08996 * 109.47225 * 89.97815 * 1 2 3 20 20 H 1.09006 * 109.46856 * 209.97586 * 1 2 3 21 21 H 1.08992 * 109.47362 * 329.97228 * 1 2 3 22 22 H 1.08991 * 109.47054 * 180.02562 * 8 6 5 23 23 H 1.09004 * 109.46242 * 299.99510 * 8 6 5 24 24 H 1.08994 * 109.47567 * 59.99505 * 8 6 5 25 25 H 0.97000 * 119.99792 * 334.99891 * 9 6 5 26 26 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8486 -0.0005 5 6 3.8937 -0.3874 -0.0004 6 6 5.3233 -0.8641 -0.0015 7 1 5.3542 -1.9207 0.2643 8 6 5.9243 -0.6710 -1.3953 9 7 6.0962 -0.0921 0.9747 10 6 7.2265 -0.6284 1.5313 11 1 7.5485 -1.6203 1.2504 12 6 7.9620 0.1054 2.4520 13 7 7.5700 1.3143 2.7939 14 14 9.5083 -0.6232 3.2055 15 1 10.4849 -0.9318 2.1303 16 1 10.1052 0.3532 4.1518 17 1 9.1636 -1.8705 3.9340 18 16 2.5061 -1.3905 -0.0074 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3633 -0.8903 0.5135 21 1 -0.3634 0.8897 0.5142 22 1 6.9581 -1.0162 -1.3962 23 1 5.3492 -1.2454 -2.1216 24 1 5.8934 0.3856 -1.6612 25 1 5.8072 0.7989 1.2267 26 1 8.0837 1.8269 3.4376 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306528769.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:09 Heat of formation + Delta-G solvation = 44.903939 kcal Electronic energy + Delta-G solvation = -11841.576374 eV Core-core repulsion = 9660.871400 eV Total energy + Delta-G solvation = -2180.704974 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.27672 -37.59053 -34.55768 -33.27735 -30.72491 -29.19757 -26.51063 -25.80277 -23.38629 -20.47048 -20.16313 -19.22899 -17.08661 -16.70062 -16.29075 -15.50534 -15.07696 -14.53533 -14.26157 -14.09352 -13.72628 -13.44199 -13.21142 -12.75645 -12.69287 -12.45736 -12.13622 -11.84500 -11.37566 -11.18043 -10.98986 -10.60491 -10.53316 -9.13348 -7.95381 -5.28342 -0.48433 -0.01789 0.38686 1.48207 1.52308 1.58169 1.60140 2.55522 3.05193 3.38843 3.68993 3.85112 4.06016 4.23772 4.49366 4.52334 4.65768 4.77896 4.90718 5.02711 5.09263 5.39337 5.48307 6.21861 7.29192 7.63070 7.98629 8.24974 9.27907 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.054864 B = 0.007585 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.234201 B = 3690.740618 C = 3834.891463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.030 4.030 3 N -0.307 5.307 4 N -0.295 5.295 5 C -0.027 4.027 6 C 0.244 3.756 7 H 0.086 0.914 8 C -0.148 4.148 9 N -0.730 5.730 10 C -0.248 4.248 11 H 0.091 0.909 12 C -0.076 4.076 13 N -0.972 5.972 14 Si 0.982 3.018 15 H -0.273 1.273 16 H -0.300 1.300 17 H -0.273 1.273 18 S 0.229 5.771 19 H 0.111 0.889 20 H 0.111 0.889 21 H 0.093 0.907 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.035 0.965 25 H 0.375 0.625 26 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -9.469 -7.368 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.309 4.309 3 N -0.145 5.145 4 N -0.132 5.132 5 C -0.307 4.307 6 C 0.131 3.869 7 H 0.103 0.897 8 C -0.210 4.210 9 N -0.371 5.371 10 C -0.379 4.379 11 H 0.108 0.892 12 C -0.268 4.268 13 N -0.622 5.622 14 Si 0.809 3.191 15 H -0.199 1.199 16 H -0.226 1.226 17 H -0.199 1.199 18 S 0.474 5.526 19 H 0.130 0.870 20 H 0.129 0.871 21 H 0.112 0.888 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.054 0.946 25 H 0.208 0.792 26 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.274 -9.231 -7.325 17.751 hybrid contribution 0.994 0.740 0.707 1.427 sum -12.280 -8.491 -6.619 16.331 Atomic orbital electron populations 1.20625 0.80628 1.05935 1.05900 1.30043 1.06130 0.91865 1.02892 1.71422 0.97104 1.28947 1.16994 1.71324 1.07055 1.19077 1.15723 1.29897 1.04823 0.93045 1.02983 1.19063 0.80747 0.95460 0.91583 0.89652 1.22281 1.01630 1.01146 0.95901 1.42624 1.28006 1.17609 1.48848 1.19699 1.00479 0.99944 1.17762 0.89159 1.25715 1.03047 0.96922 1.01105 1.69892 1.42212 1.12507 1.37554 0.85102 0.79051 0.77033 0.77872 1.19895 1.22642 1.19856 1.82994 0.94872 1.10080 1.64697 0.87048 0.87068 0.88848 0.91677 0.90483 0.94562 0.79242 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.49 71.24 0.75 -0.33 15 2 C -0.03 -0.82 7.53 88.47 0.67 -0.16 15 3 N -0.31 -11.70 11.66 -50.84 -0.59 -12.29 15 4 N -0.30 -12.86 11.32 -50.84 -0.58 -13.43 15 5 C -0.03 -1.03 6.34 88.46 0.56 -0.46 15 6 C 0.24 9.91 3.41 44.24 0.15 10.06 15 7 H 0.09 3.13 8.08 -2.39 -0.02 3.11 15 8 C -0.15 -5.35 9.47 71.98 0.68 -4.66 15 9 N -0.73 -38.64 5.11 -326.49 -1.67 -40.31 15 10 C -0.25 -13.72 9.93 84.04 0.83 -12.89 15 11 H 0.09 4.58 7.83 -2.91 -0.02 4.55 15 12 C -0.08 -4.39 5.50 84.86 0.47 -3.93 15 13 N -0.97 -61.88 13.06 21.65 0.28 -61.60 15 14 Si 0.98 46.09 29.55 68.60 2.03 48.12 15 15 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 16 H -0.30 -14.41 7.11 99.48 0.71 -13.70 15 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 18 S 0.23 5.93 23.04 -56.49 -1.30 4.63 15 19 H 0.11 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.11 1.07 8.14 -2.38 -0.02 1.05 15 21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 25 H 0.38 22.49 7.52 -92.71 -0.70 21.80 15 26 H 0.25 15.50 8.31 -92.70 -0.77 14.73 15 Total: -1.00 -72.85 248.32 2.77 -70.08 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.49 Total: 17.16 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.11 Total: -12.36 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -2.55 Total: -127.63 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.30 Total: 4.63 kcal Total: -72.85 2.77 -70.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306528769.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.986 kcal (2) G-P(sol) polarization free energy of solvation -72.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds