Wall clock time and date at job start Sun Mar 29 2020 21:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47154 * 2 1 4 4 C 1.46268 * 110.99446 * 66.04892 * 3 2 1 5 5 C 1.47545 * 114.37210 * 211.44115 * 4 3 2 6 6 C 1.54940 * 109.73826 * 297.78179 * 5 4 3 7 7 N 1.44684 * 109.52354 * 69.47691 * 6 5 4 8 8 C 1.36931 * 118.54906 * 90.90073 * 7 6 5 9 9 H 1.08006 * 120.00185 * 342.73095 * 8 7 6 10 10 C 1.38812 * 120.00116 * 162.73469 * 8 7 6 11 11 N 1.31616 * 119.99833 * 334.29457 * 10 8 7 12 12 Si 1.86804 * 119.99907 * 154.29879 * 10 8 7 13 13 H 1.48506 * 109.47121 * 89.99940 * 12 10 8 14 14 H 1.48498 * 109.46880 * 209.99681 * 12 10 8 15 15 H 1.48494 * 109.47326 * 329.99847 * 12 10 8 16 16 C 1.47776 * 122.90509 * 270.92246 * 7 6 5 17 17 H 1.09005 * 109.06555 * 162.35091 * 16 7 6 18 18 C 1.52999 * 109.06627 * 281.35668 * 16 7 6 19 19 C 1.44760 * 111.00095 * 189.53419 * 3 2 1 20 20 H 1.09008 * 109.47152 * 59.99400 * 1 2 3 21 21 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47347 * 299.99502 * 1 2 3 23 23 H 1.09007 * 109.46862 * 240.00106 * 2 1 3 24 24 H 1.08998 * 109.47114 * 120.00525 * 2 1 3 25 25 H 1.08997 * 108.50468 * 332.71288 * 4 3 2 26 26 H 1.09004 * 108.50330 * 90.34100 * 4 3 2 27 27 H 1.09002 * 109.42564 * 57.86456 * 5 4 3 28 28 H 1.09003 * 109.42835 * 177.69590 * 5 4 3 29 29 H 1.09001 * 109.46848 * 189.48937 * 6 5 4 30 30 H 1.08996 * 109.46261 * 309.46463 * 6 5 4 31 31 H 0.97005 * 119.99874 * 180.02562 * 11 10 8 32 32 H 1.08991 * 109.47162 * 59.99650 * 18 16 7 33 33 H 1.08998 * 109.47449 * 179.97438 * 18 16 7 34 34 H 1.09010 * 109.46660 * 299.99917 * 18 16 7 35 35 H 1.08994 * 109.43988 * 262.21063 * 19 3 2 36 36 H 1.09000 * 109.43774 * 22.08223 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6716 2.0638 1.2480 5 6 1.4368 3.5137 1.1075 6 6 2.7323 4.2085 0.6181 7 7 2.9977 3.8270 -0.7521 8 6 2.4851 4.6016 -1.7581 9 1 1.6838 5.2955 -1.5506 10 6 2.9950 4.4950 -3.0448 11 7 4.2302 4.0802 -3.2308 12 14 1.9283 4.9403 -4.5122 13 1 2.1003 6.3806 -4.8303 14 1 2.3324 4.1228 -5.6842 15 1 0.5041 4.6715 -4.1886 16 6 3.7972 2.6379 -1.1138 17 1 3.6012 2.3803 -2.1547 18 6 5.2827 2.9663 -0.9518 19 6 3.4491 1.4298 -0.2238 20 1 -0.3634 0.5140 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 0.7692 1.6047 1.6516 26 1 2.4827 1.9146 1.9608 27 1 0.6391 3.6833 0.3843 28 1 1.1449 3.9289 2.0721 29 1 2.6088 5.2900 0.6764 30 1 3.5680 3.9041 1.2481 31 1 4.5867 4.0061 -4.1299 32 1 5.4830 3.2421 0.0834 33 1 5.8789 2.0931 -1.2166 34 1 5.5445 3.7977 -1.6065 35 1 3.9633 1.5238 0.7326 36 1 3.7679 0.5118 -0.7176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306530701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:53 Heat of formation + Delta-G solvation = 37.464993 kcal Electronic energy + Delta-G solvation = -15578.625526 eV Core-core repulsion = 13291.937205 eV Total energy + Delta-G solvation = -2286.688322 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.56246 -35.31220 -32.73163 -31.50620 -30.13635 -28.18879 -25.44292 -23.91602 -23.13366 -21.50152 -19.67317 -18.83298 -16.48993 -15.41275 -15.21226 -14.64258 -14.02326 -13.77911 -13.27277 -12.75790 -12.43374 -12.28058 -11.85019 -11.67186 -11.45052 -11.18039 -10.88565 -10.83202 -10.69547 -10.39188 -10.29800 -10.13584 -9.89540 -9.64475 -9.48687 -9.20319 -8.15576 -7.49258 -6.57825 -5.61163 -2.90992 3.48673 3.56757 3.61809 4.48578 4.67928 5.30462 5.42783 5.50772 5.54729 5.67092 5.75744 5.85756 6.04038 6.07486 6.15390 6.20640 6.32405 6.39012 6.48687 6.56962 6.61343 6.70307 6.89761 6.95978 7.04552 7.17393 7.26656 7.75421 7.81602 7.88161 7.99542 8.23850 8.60990 9.43102 10.11145 10.52839 11.43025 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028466 B = 0.012206 C = 0.011245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.407149 B = 2293.383276 C = 2489.457056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.516 5.516 4 C 0.074 3.926 5 C -0.146 4.146 6 C 0.161 3.839 7 N -0.575 5.575 8 C -0.237 4.237 9 H 0.064 0.936 10 C -0.002 4.002 11 N -0.899 5.899 12 Si 0.888 3.112 13 H -0.292 1.292 14 H -0.292 1.292 15 H -0.283 1.283 16 C 0.204 3.796 17 H 0.091 0.909 18 C -0.148 4.148 19 C 0.042 3.958 20 H 0.064 0.936 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.019 0.981 25 H 0.050 0.950 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.026 0.974 31 H 0.249 0.751 32 H 0.010 0.990 33 H 0.019 0.981 34 H 0.100 0.900 35 H 0.023 0.977 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 -6.220 7.158 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 N -0.240 5.240 4 C -0.053 4.053 5 C -0.187 4.187 6 C 0.033 3.967 7 N -0.295 5.295 8 C -0.366 4.366 9 H 0.082 0.918 10 C -0.198 4.198 11 N -0.545 5.545 12 Si 0.719 3.281 13 H -0.220 1.220 14 H -0.219 1.219 15 H -0.209 1.209 16 C 0.097 3.903 17 H 0.109 0.891 18 C -0.208 4.208 19 C -0.087 4.087 20 H 0.083 0.917 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.038 0.962 34 H 0.118 0.882 35 H 0.041 0.959 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.413 -6.008 6.636 9.580 hybrid contribution -0.171 -0.342 -0.117 0.400 sum -3.584 -6.349 6.520 9.781 Atomic orbital electron populations 1.21823 0.95532 1.00503 1.02585 1.22126 0.95756 0.89997 0.99586 1.60871 1.14760 1.13133 1.35223 1.20879 0.98655 0.96333 0.89460 1.21669 1.02441 0.95047 0.99575 1.20628 0.92915 0.96399 0.86796 1.43627 1.60260 1.25694 0.99940 1.19185 1.11795 1.17369 0.88286 0.91768 1.24660 0.95500 1.01759 0.97913 1.70093 1.11924 1.52437 1.20058 0.86496 0.80993 0.77314 0.83316 1.21996 1.21851 1.20883 1.20624 0.88826 0.83028 0.97812 0.89066 1.22365 0.97653 1.01913 0.98828 1.22778 0.86416 1.00503 0.99041 0.91684 0.93131 0.92904 0.91282 0.96306 0.93151 0.96428 0.91370 0.93338 0.93879 0.95617 0.94082 0.97063 0.96232 0.88170 0.95881 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.89 37.16 0.37 -1.70 16 2 C 0.05 0.84 5.47 -3.83 -0.02 0.82 16 3 N -0.52 -9.93 4.16 -239.59 -1.00 -10.93 16 4 C 0.07 1.32 4.76 -6.80 -0.03 1.29 16 5 C -0.15 -2.74 6.02 -28.34 -0.17 -2.91 16 6 C 0.16 3.47 5.67 -3.99 -0.02 3.45 16 7 N -0.58 -14.40 2.19 -164.28 -0.36 -14.76 16 8 C -0.24 -6.53 9.46 -15.06 -0.14 -6.67 16 9 H 0.06 1.77 7.95 -52.48 -0.42 1.35 16 10 C 0.00 -0.05 4.68 -17.43 -0.08 -0.13 16 11 N -0.90 -25.47 8.85 55.49 0.49 -24.97 16 12 Si 0.89 22.13 29.62 -169.99 -5.04 17.10 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 16 C 0.20 4.89 2.31 -66.69 -0.15 4.73 16 17 H 0.09 2.51 5.97 -51.93 -0.31 2.20 16 18 C -0.15 -3.45 8.91 37.16 0.33 -3.11 16 19 C 0.04 0.85 4.90 -4.43 -0.02 0.83 16 20 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.72 6.26 -51.93 -0.32 0.40 16 23 H 0.07 1.08 7.79 -51.92 -0.40 0.68 16 24 H 0.02 0.28 8.12 -51.93 -0.42 -0.15 16 25 H 0.05 0.80 5.71 -51.93 -0.30 0.50 16 26 H 0.02 0.31 7.17 -51.93 -0.37 -0.06 16 27 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.93 7.97 -51.93 -0.41 0.52 16 30 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.01 0.23 7.90 -51.93 -0.41 -0.18 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 2.65 6.08 -51.92 -0.32 2.34 16 35 H 0.02 0.45 6.98 -51.93 -0.36 0.09 16 36 H 0.05 1.01 7.43 -51.93 -0.39 0.62 16 LS Contribution 270.39 15.07 4.07 4.07 Total: -1.00 -28.46 270.39 -7.87 -36.33 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.09 Total: -3.42 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.05 Total: -3.41 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.86 Total: -50.67 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.04 Total: 17.10 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.46 -7.87 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306530701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.791 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds