Wall clock time and date at job start Sun Mar 29 2020 21:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47154 * 2 1 4 4 C 1.46268 * 110.99446 * 66.04892 * 3 2 1 5 5 C 1.47545 * 114.37210 * 211.44115 * 4 3 2 6 6 C 1.54940 * 109.73826 * 297.78179 * 5 4 3 7 7 N 1.44684 * 109.52354 * 69.47691 * 6 5 4 8 8 C 1.36931 * 118.54906 * 90.90073 * 7 6 5 9 9 H 1.08006 * 120.00185 * 342.73095 * 8 7 6 10 10 C 1.38812 * 120.00116 * 162.73469 * 8 7 6 11 11 N 1.31616 * 119.99833 * 334.29457 * 10 8 7 12 12 Si 1.86804 * 119.99907 * 154.29879 * 10 8 7 13 13 H 1.48506 * 109.47121 * 89.99940 * 12 10 8 14 14 H 1.48498 * 109.46880 * 209.99681 * 12 10 8 15 15 H 1.48494 * 109.47326 * 329.99847 * 12 10 8 16 16 C 1.47776 * 122.90509 * 270.92246 * 7 6 5 17 17 H 1.09005 * 109.06555 * 162.35091 * 16 7 6 18 18 C 1.52999 * 109.06627 * 281.35668 * 16 7 6 19 19 C 1.44760 * 111.00095 * 189.53419 * 3 2 1 20 20 H 1.09008 * 109.47152 * 59.99400 * 1 2 3 21 21 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47347 * 299.99502 * 1 2 3 23 23 H 1.09007 * 109.46862 * 240.00106 * 2 1 3 24 24 H 1.08998 * 109.47114 * 120.00525 * 2 1 3 25 25 H 1.08997 * 108.50468 * 332.71288 * 4 3 2 26 26 H 1.09004 * 108.50330 * 90.34100 * 4 3 2 27 27 H 1.09002 * 109.42564 * 57.86456 * 5 4 3 28 28 H 1.09003 * 109.42835 * 177.69590 * 5 4 3 29 29 H 1.09001 * 109.46848 * 189.48937 * 6 5 4 30 30 H 1.08996 * 109.46261 * 309.46463 * 6 5 4 31 31 H 0.97005 * 119.99874 * 180.02562 * 11 10 8 32 32 H 1.08991 * 109.47162 * 59.99650 * 18 16 7 33 33 H 1.08998 * 109.47449 * 179.97438 * 18 16 7 34 34 H 1.09010 * 109.46660 * 299.99917 * 18 16 7 35 35 H 1.08994 * 109.43988 * 262.21063 * 19 3 2 36 36 H 1.09000 * 109.43774 * 22.08223 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6716 2.0638 1.2480 5 6 1.4368 3.5137 1.1075 6 6 2.7323 4.2085 0.6181 7 7 2.9977 3.8270 -0.7521 8 6 2.4851 4.6016 -1.7581 9 1 1.6838 5.2955 -1.5506 10 6 2.9950 4.4950 -3.0448 11 7 4.2302 4.0802 -3.2308 12 14 1.9283 4.9403 -4.5122 13 1 2.1003 6.3806 -4.8303 14 1 2.3324 4.1228 -5.6842 15 1 0.5041 4.6715 -4.1886 16 6 3.7972 2.6379 -1.1138 17 1 3.6012 2.3803 -2.1547 18 6 5.2827 2.9663 -0.9518 19 6 3.4491 1.4298 -0.2238 20 1 -0.3634 0.5140 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 0.7692 1.6047 1.6516 26 1 2.4827 1.9146 1.9608 27 1 0.6391 3.6833 0.3843 28 1 1.1449 3.9289 2.0721 29 1 2.6088 5.2900 0.6764 30 1 3.5680 3.9041 1.2481 31 1 4.5867 4.0061 -4.1299 32 1 5.4830 3.2421 0.0834 33 1 5.8789 2.0931 -1.2166 34 1 5.5445 3.7977 -1.6065 35 1 3.9633 1.5238 0.7326 36 1 3.7679 0.5118 -0.7176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306530701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:53 Heat of formation + Delta-G solvation = 20.415209 kcal Electronic energy + Delta-G solvation = -15579.364860 eV Core-core repulsion = 13291.937205 eV Total energy + Delta-G solvation = -2287.427656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11138 -37.03014 -34.38073 -33.33664 -31.71360 -29.87547 -27.20188 -25.52144 -24.96214 -22.96345 -21.11185 -20.71642 -18.38415 -17.08542 -16.79072 -16.16268 -15.77564 -15.58541 -14.80026 -14.32489 -14.06003 -13.90695 -13.56310 -13.23295 -12.99170 -12.73647 -12.65679 -12.63218 -12.25224 -12.18495 -11.90976 -11.84002 -11.64101 -11.40908 -11.21811 -11.02412 -10.19871 -8.93158 -8.55585 -7.70605 -5.01354 1.47747 1.51930 1.60761 2.61899 3.12097 3.35689 3.81005 4.07566 4.18246 4.28669 4.37797 4.52283 4.57693 4.65494 4.72262 4.79536 4.91274 4.94458 5.00732 5.01855 5.16155 5.17852 5.24171 5.31251 5.37939 5.43786 5.64104 5.71857 5.88346 6.16247 6.47702 6.50666 6.59316 7.35631 8.14151 8.48974 9.30419 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028466 B = 0.012206 C = 0.011245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.407149 B = 2293.383276 C = 2489.457056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 N -0.544 5.544 4 C 0.073 3.927 5 C -0.134 4.134 6 C 0.155 3.845 7 N -0.588 5.588 8 C -0.246 4.246 9 H 0.057 0.943 10 C -0.047 4.047 11 N -0.916 5.916 12 Si 0.944 3.056 13 H -0.291 1.291 14 H -0.296 1.296 15 H -0.283 1.283 16 C 0.203 3.797 17 H 0.050 0.950 18 C -0.137 4.137 19 C 0.055 3.945 20 H 0.042 0.958 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.243 0.757 32 H 0.020 0.980 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.168 -7.374 8.602 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 N -0.268 5.268 4 C -0.055 4.055 5 C -0.174 4.174 6 C 0.028 3.972 7 N -0.309 5.309 8 C -0.376 4.376 9 H 0.075 0.925 10 C -0.242 4.242 11 N -0.563 5.563 12 Si 0.774 3.226 13 H -0.218 1.218 14 H -0.222 1.222 15 H -0.209 1.209 16 C 0.096 3.904 17 H 0.068 0.932 18 C -0.197 4.197 19 C -0.075 4.075 20 H 0.062 0.938 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.316 -7.165 8.108 11.649 hybrid contribution 0.103 0.039 -0.525 0.537 sum -4.213 -7.126 7.582 11.226 Atomic orbital electron populations 1.21775 0.94231 1.02047 1.01730 1.22190 0.96754 0.88188 1.00341 1.60771 1.14001 1.15537 1.36517 1.20890 1.00052 0.95443 0.89079 1.21532 0.99607 0.95951 1.00340 1.20798 0.94699 0.96342 0.85378 1.43804 1.60464 1.25862 1.00740 1.19369 1.11421 1.17449 0.89394 0.92527 1.25228 0.96391 1.02814 0.99730 1.70249 1.12708 1.53584 1.19776 0.85626 0.79437 0.76851 0.80662 1.21830 1.22231 1.20906 1.20531 0.88905 0.84304 0.96619 0.93163 1.22165 0.97839 1.01231 0.98424 1.22496 0.87594 0.98806 0.98571 0.93843 0.90432 0.92352 0.91611 0.94348 0.90770 0.95529 0.93819 0.90038 0.94733 0.94823 0.94711 0.96100 0.94628 0.91667 0.94970 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.83 16 2 C 0.05 1.51 5.47 86.30 0.47 1.98 16 3 N -0.54 -19.78 4.16 -911.94 -3.79 -23.57 16 4 C 0.07 2.35 4.76 84.72 0.40 2.75 16 5 C -0.13 -4.71 6.02 29.55 0.18 -4.53 16 6 C 0.15 6.52 5.67 87.38 0.50 7.02 16 7 N -0.59 -29.47 2.19 -673.67 -1.47 -30.95 16 8 C -0.25 -13.75 9.46 84.03 0.79 -12.96 16 9 H 0.06 3.17 7.95 -2.91 -0.02 3.15 16 10 C -0.05 -2.65 4.68 84.86 0.40 -2.26 16 11 N -0.92 -53.14 8.85 21.65 0.19 -52.95 16 12 Si 0.94 46.40 29.62 68.60 2.03 48.43 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 14 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 15 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 16 C 0.20 9.73 2.31 45.10 0.10 9.83 16 17 H 0.05 2.82 5.97 -2.38 -0.01 2.81 16 18 C -0.14 -6.36 8.91 71.98 0.64 -5.72 16 19 C 0.06 2.12 4.90 87.06 0.43 2.55 16 20 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.39 6.26 -2.39 -0.01 1.38 16 23 H 0.07 1.91 7.79 -2.38 -0.02 1.90 16 24 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 25 H 0.07 2.06 5.71 -2.39 -0.01 2.04 16 26 H 0.03 0.83 7.17 -2.38 -0.02 0.81 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.03 1.48 7.97 -2.39 -0.02 1.46 16 30 H 0.03 1.35 7.85 -2.39 -0.02 1.33 16 31 H 0.24 13.87 8.31 -92.70 -0.77 13.10 16 32 H 0.02 0.88 7.90 -2.39 -0.02 0.86 16 33 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 3.51 6.08 -2.38 -0.01 3.50 16 35 H 0.03 1.18 6.98 -2.39 -0.02 1.16 16 36 H 0.06 2.31 7.43 -2.39 -0.02 2.29 16 Total: -1.00 -61.16 270.39 2.61 -58.55 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.03 Total: 4.64 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 4.62 Total: -4.16 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -5.07 Total: -107.46 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -61.16 2.61 -58.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306530701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.970 kcal (2) G-P(sol) polarization free energy of solvation -61.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds