Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.99665 * 2 1 4 4 O 1.42908 * 109.46886 * 301.09747 * 3 2 1 5 5 C 1.54315 * 109.88508 * 121.09538 * 2 1 3 6 6 C 1.55156 * 102.94436 * 97.22518 * 5 2 1 7 7 C 1.54906 * 101.61451 * 35.48113 * 6 5 2 8 8 N 1.47017 * 109.87941 * 238.90752 * 2 1 3 9 9 C 1.34780 * 125.65357 * 59.48599 * 8 2 1 10 10 O 1.21689 * 119.99743 * 359.97438 * 9 8 2 11 11 C 1.46372 * 119.99968 * 179.97438 * 9 8 2 12 12 H 1.07995 * 120.00584 * 0.02562 * 11 9 8 13 13 C 1.40055 * 119.99726 * 179.97438 * 11 9 8 14 14 N 1.30672 * 119.99897 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00062 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46868 * 60.00605 * 15 13 11 17 17 H 1.48498 * 109.47194 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47325 * 300.00895 * 15 13 11 19 19 H 1.09004 * 109.47271 * 298.90376 * 1 2 3 20 20 H 1.08999 * 109.47439 * 58.90372 * 1 2 3 21 21 H 1.09000 * 109.46977 * 178.90920 * 1 2 3 22 22 H 1.09000 * 109.46955 * 61.09196 * 3 2 1 23 23 H 1.09001 * 109.47001 * 181.10028 * 3 2 1 24 24 H 0.96699 * 113.99709 * 180.02562 * 4 3 2 25 25 H 1.09001 * 110.72062 * 338.86120 * 5 2 1 26 26 H 1.09005 * 110.72207 * 215.59089 * 5 2 1 27 27 H 1.09002 * 111.00677 * 153.57697 * 6 5 2 28 28 H 1.09002 * 111.00564 * 277.38955 * 6 5 2 29 29 H 1.09008 * 110.36753 * 81.85112 * 7 6 5 30 30 H 1.09001 * 110.37094 * 204.16995 * 7 6 5 31 31 H 0.96996 * 119.99948 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5621 2.1234 -1.1537 5 6 2.0549 -0.7495 1.2426 6 6 2.3519 -2.1694 0.6923 7 6 2.8564 -1.8507 -0.7372 8 7 2.0299 -0.7140 -1.1839 9 6 1.7741 -0.3852 -2.4658 10 8 1.0737 0.5772 -2.7189 11 6 2.3387 -1.1858 -3.5533 12 1 2.9599 -2.0402 -3.3287 13 6 2.0724 -0.8444 -4.8852 14 7 1.3204 0.1890 -5.1570 15 14 2.7935 -1.8657 -6.2732 16 1 2.3127 -3.2660 -6.1588 17 1 2.3657 -1.3000 -7.5779 18 1 4.2759 -1.8427 -6.1863 19 1 -0.3634 0.4967 0.8997 20 1 -0.3634 0.5308 -0.8800 21 1 -0.3633 -1.0275 -0.0196 22 1 1.7106 1.9491 0.8996 23 1 3.1430 1.4278 -0.0197 24 1 1.8550 3.0426 -1.2193 25 1 1.2918 -0.7890 2.0200 26 1 2.9657 -0.2830 1.6182 27 1 3.1271 -2.6618 1.2795 28 1 1.4454 -2.7739 0.6610 29 1 3.9089 -1.5680 -0.7138 30 1 2.7079 -2.7092 -1.3922 31 1 1.1363 0.4257 -6.0795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306536404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = -80.725072 kcal Electronic energy + Delta-G solvation = -15260.610736 eV Core-core repulsion = 12735.245552 eV Total energy + Delta-G solvation = -2525.365184 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.03045 -35.60693 -35.20236 -32.32127 -31.04717 -30.04337 -25.99847 -25.94604 -24.31623 -21.53307 -20.47737 -17.78723 -16.51204 -16.12905 -15.38351 -15.24186 -14.25864 -13.85073 -13.56741 -12.90227 -12.63204 -12.34395 -11.85972 -11.71829 -11.44571 -11.27770 -11.02967 -10.78547 -10.68040 -10.60940 -10.22367 -10.08363 -10.04488 -9.85805 -9.04991 -8.70433 -7.22892 -6.93471 -6.01895 -4.47064 3.22013 3.26477 3.28235 4.17798 4.63514 4.74486 4.95032 5.12099 5.30167 5.56770 5.74801 5.85508 5.89367 5.96941 6.02767 6.11466 6.15153 6.21209 6.43659 6.51277 6.56307 6.71002 6.81209 7.22973 7.56630 7.61588 8.28782 8.57250 8.62134 9.17238 9.75539 10.76965 11.04467 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038210 B = 0.011473 C = 0.009625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.623981 B = 2439.919399 C = 2908.331058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.169 3.831 3 C 0.075 3.925 4 O -0.509 6.509 5 C -0.122 4.122 6 C -0.133 4.133 7 C 0.116 3.884 8 N -0.633 5.633 9 C 0.569 3.431 10 O -0.527 6.527 11 C -0.544 4.544 12 H 0.063 0.937 13 C 0.088 3.912 14 N -0.770 5.770 15 Si 0.903 3.097 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.270 1.270 19 H 0.039 0.961 20 H 0.083 0.917 21 H 0.044 0.956 22 H 0.027 0.973 23 H 0.030 0.970 24 H 0.348 0.652 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.815 -1.896 10.132 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.083 3.917 3 C -0.005 4.005 4 O -0.310 6.310 5 C -0.160 4.160 6 C -0.172 4.172 7 C -0.009 4.009 8 N -0.374 5.374 9 C 0.373 3.627 10 O -0.405 6.405 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.130 4.130 14 N -0.400 5.400 15 Si 0.728 3.272 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.195 1.195 19 H 0.058 0.942 20 H 0.102 0.898 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.191 0.809 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.008 -1.783 9.601 9.970 hybrid contribution 0.836 -0.089 -0.428 0.944 sum 2.845 -1.872 9.173 9.785 Atomic orbital electron populations 1.22029 0.95178 1.01036 1.02124 1.20613 0.94154 0.90217 0.86753 1.22475 0.96217 0.93643 0.88164 1.87322 1.74390 1.26251 1.43006 1.22619 1.00751 0.96101 0.96569 1.22781 1.01101 0.96262 0.97014 1.21887 0.94328 0.91335 0.93343 1.48969 1.54015 1.29791 1.04668 1.17967 0.81258 0.84834 0.78665 1.90654 1.40237 1.28988 1.80592 1.20874 1.33455 1.14001 0.89796 0.91873 1.25655 0.93654 0.94390 0.99324 1.70017 1.28501 1.22040 1.19402 0.86529 0.79900 0.80580 0.80238 1.19455 1.20696 1.19483 0.94171 0.89801 0.93670 0.95454 0.95180 0.80909 0.91019 0.91472 0.91221 0.91257 0.93930 0.91392 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.22 37.16 0.31 -2.64 16 2 C 0.17 3.37 0.79 -130.85 -0.10 3.26 16 3 C 0.07 1.44 5.99 37.16 0.22 1.67 16 4 O -0.51 -11.66 9.42 -59.65 -0.56 -12.22 16 5 C -0.12 -1.84 6.02 -24.90 -0.15 -1.99 16 6 C -0.13 -1.98 7.08 -24.58 -0.17 -2.15 16 7 C 0.12 2.22 6.52 -2.50 -0.02 2.21 16 8 N -0.63 -14.96 2.82 -157.41 -0.44 -15.41 16 9 C 0.57 16.61 7.25 -12.99 -0.09 16.51 16 10 O -0.53 -16.92 10.79 -19.22 -0.21 -17.13 16 11 C -0.54 -15.86 8.98 -35.63 -0.32 -16.18 16 12 H 0.06 1.71 6.64 -52.49 -0.35 1.36 16 13 C 0.09 2.54 5.50 -17.36 -0.10 2.44 16 14 N -0.77 -23.58 11.83 55.55 0.66 -22.92 16 15 Si 0.90 20.79 29.56 -169.99 -5.02 15.76 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 20 H 0.08 2.07 6.31 -51.93 -0.33 1.74 16 21 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.35 6.29 9.12 45.56 0.42 6.71 16 25 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 26 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.07 1.34 7.15 -51.93 -0.37 0.97 16 31 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 LS Contribution 252.28 15.07 3.80 3.80 Total: -1.00 -35.30 252.28 -5.74 -41.05 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.54 Total: 3.94 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.43 Total: 3.13 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.21 Total: -38.33 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.77 Total: -29.35 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.30 -5.74 -41.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306536404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.676 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds