Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.99665 * 2 1 4 4 O 1.42908 * 109.46886 * 301.09747 * 3 2 1 5 5 C 1.54315 * 109.88508 * 121.09538 * 2 1 3 6 6 C 1.55156 * 102.94436 * 97.22518 * 5 2 1 7 7 C 1.54906 * 101.61451 * 35.48113 * 6 5 2 8 8 N 1.47017 * 109.87941 * 238.90752 * 2 1 3 9 9 C 1.34780 * 125.65357 * 59.48599 * 8 2 1 10 10 O 1.21689 * 119.99743 * 359.97438 * 9 8 2 11 11 C 1.46372 * 119.99968 * 179.97438 * 9 8 2 12 12 H 1.07995 * 120.00584 * 0.02562 * 11 9 8 13 13 C 1.40055 * 119.99726 * 179.97438 * 11 9 8 14 14 N 1.30672 * 119.99897 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00062 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46868 * 60.00605 * 15 13 11 17 17 H 1.48498 * 109.47194 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47325 * 300.00895 * 15 13 11 19 19 H 1.09004 * 109.47271 * 298.90376 * 1 2 3 20 20 H 1.08999 * 109.47439 * 58.90372 * 1 2 3 21 21 H 1.09000 * 109.46977 * 178.90920 * 1 2 3 22 22 H 1.09000 * 109.46955 * 61.09196 * 3 2 1 23 23 H 1.09001 * 109.47001 * 181.10028 * 3 2 1 24 24 H 0.96699 * 113.99709 * 180.02562 * 4 3 2 25 25 H 1.09001 * 110.72062 * 338.86120 * 5 2 1 26 26 H 1.09005 * 110.72207 * 215.59089 * 5 2 1 27 27 H 1.09002 * 111.00677 * 153.57697 * 6 5 2 28 28 H 1.09002 * 111.00564 * 277.38955 * 6 5 2 29 29 H 1.09008 * 110.36753 * 81.85112 * 7 6 5 30 30 H 1.09001 * 110.37094 * 204.16995 * 7 6 5 31 31 H 0.96996 * 119.99948 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5621 2.1234 -1.1537 5 6 2.0549 -0.7495 1.2426 6 6 2.3519 -2.1694 0.6923 7 6 2.8564 -1.8507 -0.7372 8 7 2.0299 -0.7140 -1.1839 9 6 1.7741 -0.3852 -2.4658 10 8 1.0737 0.5772 -2.7189 11 6 2.3387 -1.1858 -3.5533 12 1 2.9599 -2.0402 -3.3287 13 6 2.0724 -0.8444 -4.8852 14 7 1.3204 0.1890 -5.1570 15 14 2.7935 -1.8657 -6.2732 16 1 2.3127 -3.2660 -6.1588 17 1 2.3657 -1.3000 -7.5779 18 1 4.2759 -1.8427 -6.1863 19 1 -0.3634 0.4967 0.8997 20 1 -0.3634 0.5308 -0.8800 21 1 -0.3633 -1.0275 -0.0196 22 1 1.7106 1.9491 0.8996 23 1 3.1430 1.4278 -0.0197 24 1 1.8550 3.0426 -1.2193 25 1 1.2918 -0.7890 2.0200 26 1 2.9657 -0.2830 1.6182 27 1 3.1271 -2.6618 1.2795 28 1 1.4454 -2.7739 0.6610 29 1 3.9089 -1.5680 -0.7138 30 1 2.7079 -2.7092 -1.3922 31 1 1.1363 0.4257 -6.0795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306536404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = -107.346717 kcal Electronic energy + Delta-G solvation = -15261.765138 eV Core-core repulsion = 12735.245552 eV Total energy + Delta-G solvation = -2526.519585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65370 -37.60582 -36.87267 -34.49894 -32.69596 -31.63336 -28.14543 -27.50640 -25.80255 -23.24709 -22.02799 -19.58374 -18.22524 -17.96036 -17.35887 -16.79354 -16.07117 -15.52076 -15.15910 -14.55469 -14.33956 -13.97414 -13.46793 -13.25965 -13.18344 -13.11371 -12.78000 -12.54171 -12.33860 -12.30980 -11.94642 -11.76640 -11.49650 -11.37197 -10.84657 -10.63607 -9.42383 -8.80392 -8.15948 -6.72119 1.37575 1.41990 1.52016 2.26319 2.61582 2.97227 3.52722 3.73910 3.83725 4.07624 4.24233 4.34236 4.39542 4.48822 4.66892 4.72374 4.79514 4.93877 4.99433 5.08695 5.14499 5.25783 5.39284 5.42223 5.56865 5.85301 6.18449 6.63989 6.97340 7.14783 7.73919 8.65339 8.91396 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038210 B = 0.011473 C = 0.009625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.623981 B = 2439.919399 C = 2908.331058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.150 3.850 3 C 0.070 3.930 4 O -0.550 6.550 5 C -0.109 4.109 6 C -0.118 4.118 7 C 0.104 3.896 8 N -0.644 5.644 9 C 0.551 3.449 10 O -0.570 6.570 11 C -0.576 4.576 12 H 0.075 0.925 13 C 0.030 3.970 14 N -0.823 5.823 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.257 1.257 19 H 0.076 0.924 20 H 0.028 0.972 21 H 0.043 0.957 22 H 0.066 0.934 23 H 0.031 0.969 24 H 0.361 0.639 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -3.389 11.917 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.065 3.935 3 C -0.009 4.009 4 O -0.353 6.353 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.019 4.019 8 N -0.383 5.383 9 C 0.354 3.646 10 O -0.452 6.452 11 C -0.613 4.613 12 H 0.093 0.907 13 C -0.184 4.184 14 N -0.453 5.453 15 Si 0.809 3.191 16 H -0.181 1.181 17 H -0.199 1.199 18 H -0.181 1.181 19 H 0.094 0.906 20 H 0.047 0.953 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.207 0.793 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.317 -3.297 11.451 12.370 hybrid contribution 0.427 0.405 -0.889 1.066 sum 3.744 -2.892 10.562 11.573 Atomic orbital electron populations 1.21917 0.95964 1.00452 1.01226 1.21117 0.93837 0.91078 0.87506 1.22670 0.96257 0.93524 0.88438 1.87294 1.75168 1.27668 1.45210 1.22631 1.02434 0.95046 0.94570 1.22749 1.02237 0.96624 0.94023 1.22147 0.94300 0.89429 0.96059 1.48735 1.53952 1.31190 1.04410 1.18216 0.81017 0.84499 0.80820 1.90615 1.41769 1.30487 1.82305 1.21394 1.34169 1.14740 0.91020 0.90727 1.26840 0.93583 0.95523 1.02410 1.70200 1.30383 1.24407 1.20321 0.85211 0.79327 0.78686 0.75876 1.18110 1.19925 1.18133 0.90561 0.95258 0.93825 0.91621 0.95086 0.79347 0.88055 0.89243 0.87155 0.91188 0.93246 0.92784 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.22 71.98 0.59 -4.90 16 2 C 0.15 5.76 0.79 3.95 0.00 5.76 16 3 C 0.07 2.62 5.99 71.98 0.43 3.05 16 4 O -0.55 -25.96 9.42 -125.63 -1.18 -27.14 16 5 C -0.11 -2.79 6.02 31.78 0.19 -2.60 16 6 C -0.12 -3.05 7.08 31.98 0.23 -2.82 16 7 C 0.10 3.86 6.52 86.85 0.57 4.42 16 8 N -0.64 -30.50 2.82 -770.15 -2.17 -32.67 16 9 C 0.55 33.34 7.25 86.36 0.63 33.96 16 10 O -0.57 -38.51 10.79 19.03 0.21 -38.30 16 11 C -0.58 -34.47 8.98 24.83 0.22 -34.24 16 12 H 0.07 4.10 6.64 -2.91 -0.02 4.08 16 13 C 0.03 1.78 5.50 85.31 0.47 2.25 16 14 N -0.82 -52.34 11.83 21.84 0.26 -52.08 16 15 Si 0.99 43.19 29.56 68.60 2.03 45.21 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 20 H 0.03 1.48 6.31 -2.39 -0.02 1.46 16 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.36 13.62 9.12 -74.06 -0.68 12.94 16 25 H 0.10 2.06 7.83 -2.39 -0.02 2.05 16 26 H 0.09 1.94 7.85 -2.38 -0.02 1.92 16 27 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.05 2.11 7.15 -2.39 -0.02 2.09 16 31 H 0.27 15.68 8.29 -92.71 -0.77 14.91 16 Total: -1.00 -81.59 252.28 2.92 -78.67 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.45 Total: 21.44 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 3.33 Total: 4.88 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.91 Total: -84.76 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -0.98 Total: -65.44 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -81.59 2.92 -78.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306536404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.674 kcal (2) G-P(sol) polarization free energy of solvation -81.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds