Wall clock time and date at job start Sun Mar 29 2020 21:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99813 * 2 1 4 4 H 1.48504 * 109.47040 * 269.99445 * 3 2 1 5 5 H 1.48494 * 109.47516 * 29.99573 * 3 2 1 6 6 H 1.48504 * 109.46739 * 150.00239 * 3 2 1 7 7 C 1.38997 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36885 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99978 * 180.02562 * 9 7 2 11 11 O 1.21758 * 119.99875 * 359.97438 * 10 9 7 12 12 C 1.46408 * 120.00005 * 180.02562 * 10 9 7 13 13 C 1.36856 * 125.43419 * 179.97438 * 12 10 9 14 14 C 1.37683 * 113.24638 * 180.02562 * 13 12 10 15 15 O 1.36209 * 122.49898 * 180.02562 * 14 13 12 16 16 C 1.34139 * 115.00549 * 0.02562 * 14 13 12 17 17 S 1.70602 * 110.98264 * 0.26668 * 16 14 13 18 18 H 0.97001 * 120.00009 * 0.02562 * 1 2 3 19 19 H 0.96997 * 119.99865 * 359.97438 * 9 7 2 20 20 H 1.07998 * 123.37534 * 0.04321 * 13 12 10 21 21 H 0.96701 * 114.00165 * 270.00251 * 15 14 13 22 22 H 1.08002 * 124.50567 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4401 0.7000 7 6 2.0090 -1.2038 0.0005 8 1 3.0891 -1.2038 0.0010 9 7 1.3246 -2.3892 0.0005 10 6 1.9985 -3.5565 0.0016 11 8 3.2160 -3.5564 0.0021 12 6 1.2664 -4.8244 0.0010 13 6 1.8354 -6.0691 0.0015 14 6 0.9108 -7.0892 0.0002 15 8 1.2705 -8.4030 0.0009 16 6 -0.3708 -6.6930 -0.0018 17 16 -0.4838 -4.9907 -0.0096 18 1 -0.4850 0.8401 -0.0004 19 1 0.3546 -2.3892 0.0005 20 1 2.9026 -6.2345 0.0030 21 1 1.3757 -8.7824 -0.8823 22 1 -1.2182 -7.3625 -0.0034 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306547063.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:20 Heat of formation + Delta-G solvation = -75.238632 kcal Electronic energy + Delta-G solvation = -11467.166928 eV Core-core repulsion = 9113.126335 eV Total energy + Delta-G solvation = -2354.040592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.54624 -39.68879 -36.35817 -35.81509 -33.47263 -30.47378 -27.52041 -25.36725 -22.44221 -20.77802 -19.87932 -19.34642 -18.17340 -17.06612 -16.83455 -16.08994 -15.87663 -15.55283 -14.75063 -14.43814 -13.96584 -13.59023 -13.29694 -12.93715 -12.56358 -12.20881 -12.12193 -11.68880 -11.65421 -10.72435 -10.21423 -9.87106 -9.36724 -8.60358 -6.06136 -0.48577 0.47307 0.90729 1.23438 1.41902 1.45882 1.55693 2.23990 2.26530 2.93132 3.16104 3.55394 4.04680 4.25167 4.39162 4.82213 5.13798 5.21419 5.30981 5.84906 6.39785 6.79899 6.94597 7.30935 7.86480 8.56722 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.067987 B = 0.007768 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.747079 B = 3603.544840 C = 4002.897717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.008 4.008 3 Si 1.003 2.997 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.088 0.912 9 N -0.548 5.548 10 C 0.490 3.510 11 O -0.631 6.631 12 C -0.251 4.251 13 C -0.112 4.112 14 C 0.080 3.920 15 O -0.488 6.488 16 C -0.270 4.270 17 S 0.256 5.744 18 H 0.286 0.714 19 H 0.397 0.603 20 H 0.142 0.858 21 H 0.408 0.592 22 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 -9.530 -1.786 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.210 4.210 3 Si 0.825 3.175 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.106 0.894 9 N -0.182 5.182 10 C 0.279 3.721 11 O -0.521 6.521 12 C -0.371 4.371 13 C -0.146 4.146 14 C 0.023 3.977 15 O -0.301 6.301 16 C -0.408 4.408 17 S 0.521 5.479 18 H 0.095 0.905 19 H 0.232 0.768 20 H 0.160 0.840 21 H 0.266 0.734 22 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.904 -8.279 -1.190 10.238 hybrid contribution 1.270 -0.430 -0.459 1.417 sum -4.634 -8.709 -1.650 10.002 Atomic orbital electron populations 1.69657 1.07070 1.30261 1.47563 1.26256 0.96684 1.02844 0.95186 0.84781 0.77867 0.75795 0.79018 1.19144 1.18980 1.19543 1.19843 0.93266 0.83450 1.50353 0.89433 1.41840 1.09319 1.04744 1.62290 1.17133 0.86980 0.83125 0.84866 1.90608 1.14665 1.87452 1.59343 1.24497 0.99509 0.97081 1.16040 1.20884 1.01839 0.90464 1.01456 1.16810 0.90039 0.84824 1.06067 1.84875 1.90672 1.19134 1.35380 1.25728 1.02008 1.01533 1.11539 1.83058 0.99294 0.98579 1.66926 0.90461 0.76844 0.83983 0.73381 0.77734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.70 13.05 21.67 0.28 -47.42 14 2 C -0.01 -0.40 5.50 84.94 0.47 0.06 14 3 Si 1.00 41.61 29.55 68.60 2.03 43.64 14 4 H -0.27 -10.64 7.11 99.48 0.71 -9.94 14 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 14 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 14 7 C -0.34 -19.44 9.68 84.09 0.81 -18.62 14 8 H 0.09 5.29 7.15 -2.91 -0.02 5.27 14 9 N -0.55 -29.43 5.27 -310.84 -1.64 -31.07 14 10 C 0.49 25.73 7.73 86.37 0.67 26.40 14 11 O -0.63 -37.68 16.41 -4.53 -0.07 -37.75 14 12 C -0.25 -10.33 6.45 24.07 0.16 -10.18 14 13 C -0.11 -4.11 10.00 21.81 0.22 -3.89 14 14 C 0.08 2.31 6.68 21.20 0.14 2.45 14 15 O -0.49 -11.64 13.62 -95.94 -1.31 -12.94 14 16 C -0.27 -6.81 10.90 66.88 0.73 -6.08 14 17 S 0.26 7.85 22.14 -56.49 -1.25 6.60 14 18 H 0.29 13.81 8.31 -92.71 -0.77 13.04 14 19 H 0.40 19.99 7.00 -92.71 -0.65 19.34 14 20 H 0.14 5.38 8.06 -2.91 -0.02 5.36 14 21 H 0.41 5.34 9.07 -74.06 -0.67 4.67 14 22 H 0.21 3.60 8.06 -2.91 -0.02 3.57 14 Total: -1.00 -68.88 225.94 1.19 -67.69 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.04 Total: 21.12 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 3.19 Total: -9.86 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -1.36 Total: -78.49 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -1.38 Total: -50.70 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 7.85 SS G_CDS: -1.25 Total: 6.60 kcal Total: -68.88 1.19 -67.69 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547063.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.548 kcal (2) G-P(sol) polarization free energy of solvation -68.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds